Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30291
(718 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong simil... 114 5e-26
At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to ac... 111 6e-25
At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to ac... 98 4e-21
At1g06290.1 68414.m00665 acyl-CoA oxidase (ACX3) identical to ac... 88 5e-18
At1g06310.1 68414.m00667 acyl-CoA oxidase, putative strong simil... 87 1e-17
At3g22080.1 68416.m02786 meprin and TRAF homology domain-contain... 30 1.3
At5g35338.2 68418.m04194 methyl-CpG-binding domain-containing pr... 29 2.3
At5g55430.1 68418.m06905 hypothetical protein 29 3.1
At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger) fa... 29 4.1
At1g68510.1 68414.m07826 LOB domain protein 42 / lateral organ b... 28 5.4
At3g02550.1 68416.m00244 LOB domain protein 41 / lateral organ b... 28 7.1
At2g20380.1 68415.m02379 kelch repeat-containing F-box family pr... 28 7.1
At1g67100.1 68414.m07633 LOB domain protein 40 / lateral organ b... 28 7.1
At3g59130.1 68416.m06592 DC1 domain-containing protein contains ... 27 9.4
At1g45976.1 68414.m05206 expressed protein 27 9.4
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 27 9.4
>At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong
similarity to acyl-CoA oxidase [Arabidopsis thaliana]
GI:3044214
Length = 664
Score = 114 bits (275), Expect = 5e-26
Identities = 63/140 (45%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Frame = +3
Query: 255 GVHPFFVQIRDSETHMPLTGVKVGEIGPKLG---FNTANNGFLGFNNFRIPRMNMLMKNA 425
GVH F VQ+R + H PL G+ VG+IG K G +N+ +NGFL F++FRIPR MLM+ +
Sbjct: 200 GVHGFIVQLRSLDDHSPLPGITVGDIGMKFGNGAYNSMDNGFLMFDHFRIPRDQMLMRLS 259
Query: 426 QVLKDGTYVKAKSDK-LTYGTMVFVRVLM*PTWRTSCRGASTIAVRYAAVRHQSQPKPGE 602
+V ++G YV + + L YGTMV+VR + T+ A IA RY+AVR Q G
Sbjct: 260 KVTREGKYVASDVPRQLVYGTMVYVRQSIVSNASTALARAVCIATRYSAVRRQFGSHDGG 319
Query: 603 PEPAIIEYVTQQHKLFIALS 662
E +I Y TQQ++LF L+
Sbjct: 320 IETQVINYKTQQNRLFPLLA 339
Score = 106 bits (254), Expect = 2e-23
Identities = 42/69 (60%), Positives = 58/69 (84%)
Frame = +1
Query: 43 LEIIGTYAQTELGHGTFLRGLETTATYDPKTEEFVLNSPTLTAYKWWPGGLAHTANHCIV 222
++IIG YAQTELGHG+ ++GLETTAT+DPKT++F+++SPT T+ KWWPGGL + H ++
Sbjct: 129 MQIIGCYAQTELGHGSNVQGLETTATFDPKTDQFIIHSPTQTSSKWWPGGLGKVSTHAVI 188
Query: 223 VAQLYTNGK 249
A+L TNGK
Sbjct: 189 YARLITNGK 197
>At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to
acyl-CoA oxidase [Arabidopsis thaliana] GI:3044214
Length = 675
Score = 111 bits (266), Expect = 6e-25
Identities = 61/140 (43%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Frame = +3
Query: 255 GVHPFFVQIRDSETHMPLTGVKVGEIGPKLG---FNTANNGFLGFNNFRIPRMNMLMKNA 425
G+H F VQ+R E H PL + VG+IG K+G +N+ +NGFL F++ RIPR MLM+ +
Sbjct: 200 GIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLS 259
Query: 426 QVLKDGTYVKAKSDK-LTYGTMVFVRVLM*PTWRTSCRGASTIAVRYAAVRHQSQPKPGE 602
+V ++G YV + K L YGTMV+VR + + A IA RY+AVR Q G
Sbjct: 260 KVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGG 319
Query: 603 PEPAIIEYVTQQHKLFIALS 662
E +I+Y TQQ++LF L+
Sbjct: 320 IETQVIDYKTQQNRLFPLLA 339
Score = 108 bits (259), Expect = 4e-24
Identities = 45/69 (65%), Positives = 58/69 (84%)
Frame = +1
Query: 43 LEIIGTYAQTELGHGTFLRGLETTATYDPKTEEFVLNSPTLTAYKWWPGGLAHTANHCIV 222
++IIG YAQTELGHG+ ++GLETTAT+DPKT+EFV+++PT TA KWWPGGL + H +V
Sbjct: 129 MQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVV 188
Query: 223 VAQLYTNGK 249
A+L TNGK
Sbjct: 189 YARLITNGK 197
>At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to
acyl-CoA oxidase [Arabidopsis thaliana] GI:3044212
Length = 692
Score = 98.3 bits (234), Expect = 4e-21
Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 5/142 (3%)
Frame = +3
Query: 252 LGVHPFFVQIRDSETHMPLTGVKVGEIGPKLGFNTANNGFLGFNNFRIPRMNMLMKNAQV 431
+GVH F V IRD +TH L GV++ + G K+G N +NG L F + RIPR N+L + V
Sbjct: 253 MGVHAFIVPIRDMKTHQTLPGVEIQDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDV 312
Query: 432 LKDGTYVKA-----KSDKLTYGTMVFVRVLM*PTWRTSCRGASTIAVRYAAVRHQSQPKP 596
+DGTY + K T G +V RV + + ++TIA+RY+ +R Q P P
Sbjct: 313 SRDGTYTSSLPTINKRFGATLGELVGGRVGLAYASVGVLKISATIAIRYSLLRQQFGP-P 371
Query: 597 GEPEPAIIEYVTQQHKLFIALS 662
+PE +I++Y +QQHKL L+
Sbjct: 372 KQPEVSILDYQSQQHKLMPMLA 393
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/65 (46%), Positives = 42/65 (64%)
Frame = +1
Query: 40 NLEIIGTYAQTELGHGTFLRGLETTATYDPKTEEFVLNSPTLTAYKWWPGGLAHTANHCI 219
NL+ G +A TEL HG+ ++GL+TTAT+DP +EFV+++P A KWW G A
Sbjct: 176 NLDYTGCFAMTELHHGSNVQGLQTTATFDPLKDEFVIDTPNDGAIKWWIGNAAVHGKFAT 235
Query: 220 VVAQL 234
V A+L
Sbjct: 236 VFARL 240
>At1g06290.1 68414.m00665 acyl-CoA oxidase (ACX3) identical to
acyl-CoA oxidase ACX3 [Arabidopsis thaliana] GI:8163758,
GI:8515709
Length = 675
Score = 88.2 bits (209), Expect = 5e-18
Identities = 38/64 (59%), Positives = 49/64 (76%)
Frame = +1
Query: 55 GTYAQTELGHGTFLRGLETTATYDPKTEEFVLNSPTLTAYKWWPGGLAHTANHCIVVAQL 234
G +A TELGHG+ +RG+ET TYDPKTEEFV+N+P +A K+W GG A+ A H IV +QL
Sbjct: 184 GCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQL 243
Query: 235 YTNG 246
+ NG
Sbjct: 244 HING 247
Score = 70.5 bits (165), Expect = 1e-12
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Frame = +3
Query: 255 GVHPFFVQIRDSETHMPLTGVKVGEIGPKLGFNTANNGFLGFNNFRIPRMNMLMKNAQVL 434
GVH F QIRD + + +++ + G K+G N +NG + F+N RIPR N+L A V
Sbjct: 251 GVHAFIAQIRDQDGSI-CPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNAVADVS 309
Query: 435 KDGTYVKA-KSDKLTYGT----MVFVRVLM*PTWRTSCRGASTIAVRYAAVRHQSQPKPG 599
DG YV + K +G + RV + + S + +IA+RY+ R
Sbjct: 310 SDGKYVSSIKDPDQRFGAFMAPLTSGRVTIASSAIYSAKVGLSIAIRYSLSRRAFSVTAN 369
Query: 600 EPEPAIIEYVTQQHKLFIALSE 665
PE +++Y + Q +L L++
Sbjct: 370 GPEVLLLDYPSHQRRLLPLLAK 391
>At1g06310.1 68414.m00667 acyl-CoA oxidase, putative strong
similarity to acyl-CoA oxidase ACX3 GI:8163758 from
[Arabidopsis thaliana]
Length = 675
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/64 (59%), Positives = 48/64 (75%)
Frame = +1
Query: 55 GTYAQTELGHGTFLRGLETTATYDPKTEEFVLNSPTLTAYKWWPGGLAHTANHCIVVAQL 234
G +A TELGHGT +RG+ET TYDP TEEFV+N+P +A K+W G A+ ANH IV++QL
Sbjct: 184 GCFAMTELGHGTNVRGIETVTTYDPTTEEFVINTPCESAQKYWIGEAANHANHAIVISQL 243
Query: 235 YTNG 246
NG
Sbjct: 244 SMNG 247
Score = 70.9 bits (166), Expect = 8e-13
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Frame = +3
Query: 255 GVHPFFVQIRDSETHMPLTGVKVGEIGPKLGFNTANNGFLGFNNFRIPRMNMLMKNAQVL 434
G+H F QIRD + + V++ + G K+G N +NG + F+N RIPR N+L A VL
Sbjct: 251 GIHVFIAQIRDHDGNT-CPNVRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVL 309
Query: 435 KDGTYVKA-KSDKLTYGT----MVFVRVLM*PTWRTSCRGASTIAVRYAAVRHQSQPKPG 599
DG YV + K +G + RV + + S + +A+RY+ R
Sbjct: 310 ADGKYVSSIKDPDQRFGAFLAPLTSGRVTIASSAIYSAKLGLAVAIRYSLSRRAFSVAAN 369
Query: 600 EPEPAIIEYVTQQHKLFIALSE 665
PE +++Y + Q +L L++
Sbjct: 370 GPEVLLLDYPSHQRRLLPLLAK 391
>At3g22080.1 68416.m02786 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 595
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +2
Query: 269 LRSDSRFGNAHATNRCQSWRDWT*AWL*YGQ*WFPWFQQLPYTQDEYVDEERS 427
LR FG+ H +C WR T YG W P F L +++Y+D E S
Sbjct: 204 LRVLDPFGSIHQAGQCNFWRTNTNKNQGYG--W-PTFASLDKVREKYLDNEGS 253
>At5g35338.2 68418.m04194 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429:Methyl-CpG binding
domain
Length = 155
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -1
Query: 274 TKNGWTPNICRSCTVGQ--PRCNDWPCEP 194
T +GWTPN+ SC V Q C+ WP P
Sbjct: 35 TTSGWTPNM--SCNVPQDGTTCDTWPSIP 61
>At5g55430.1 68418.m06905 hypothetical protein
Length = 149
Score = 29.1 bits (62), Expect = 3.1
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +2
Query: 374 WFQQLPYTQDEYVDEERSGSEGRNIRESEKRQAD 475
W+ +P +QD+ ++EE E + E E+ + +
Sbjct: 6 WYSPVPLSQDDDLEEEEDEKEEEEVEEEEEEEEE 39
>At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 655
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 291 ETHMPLTGVKVGEIGPKLGFNTANNGFLGFNNFRIPRMNMLMKNAQVLKDGT 446
+TH +TGV+ E P +G + + G N + P ++ AQ++ +G+
Sbjct: 79 KTHESVTGVRTDERNPNIGLGNSRSTSTGHGNTK-PLPQETVRPAQLVGEGS 129
>At1g68510.1 68414.m07826 LOB domain protein 42 / lateral organ
boundaries domain protein 42 (LBD42) identical to LOB
DOMAIN 42 [Arabidopsis thaliana] GI:17227174; supported
by full-length cDNA gi:17227173.
Length = 233
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 84 RHVSQGLRDDCNIRP*DRGVRTEQSNSNGVQMVARWIGSHG 206
R + +G DC IRP + +++ S +N +A++ G G
Sbjct: 9 RVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAG 49
>At3g02550.1 68416.m00244 LOB domain protein 41 / lateral organ
boundaries domain protein 41 (LBD41) identical to LOB
DOMAIN 41 [Arabidopsis thaliana] GI:17227172
Length = 263
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 84 RHVSQGLRDDCNIRP*DRGVRTEQSNSNGVQMVARWIGSHG 206
R + +G +DC+IRP +++ ++ +N +A++ G G
Sbjct: 9 RVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAG 49
>At2g20380.1 68415.m02379 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 348
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 46 EIIGTYAQTELGHGTFLRGLETTATYDPKTE 138
E++G T+LG G+F E T YDP +
Sbjct: 220 EVLGFSVNTDLGRGSFCMIEEITYHYDPSVK 250
>At1g67100.1 68414.m07633 LOB domain protein 40 / lateral organ
boundaries domain protein 40 (LBD40) identical to
SP|Q9ZW96 LOB domain protein 40 {Arabidopsis thaliana}
Length = 233
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +3
Query: 84 RHVSQGLRDDCNIRP*DRGVRTEQSNSNGVQMVARWIGSHG 206
R + +G ++C+IRP + +++ +S +N +A++ G G
Sbjct: 9 RVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAG 49
>At3g59130.1 68416.m06592 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 329
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = -3
Query: 518 CRSHEDPHEHHGTISQLVAFRFHVCSVLQNLSVLHQHIHPGYTEVVETKETIIGRIKAKL 339
C +PH+ + I + F VC+ L H HP Y + + K+T + ++
Sbjct: 203 CMRPVNPHDFYSCI-ECEFFIHEVCANLPRKLDHASHNHPLYMDPTDAKKTDVRKVANNF 261
Query: 338 RSNL 327
R+++
Sbjct: 262 RTSV 265
>At1g45976.1 68414.m05206 expressed protein
Length = 325
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 252 LGVHPFFVQIRDSETHMPLTGVKVGEIGPKLGFNTANN 365
+ +HP ++DS+ G+ G+I P+LGFN + N
Sbjct: 1 MALHP---HLQDSKNFRDFCGID-GQISPELGFNRSEN 34
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -3
Query: 191 PPGHHLYAVRVGLFSTNSSVLGSYVAVVSKPLR 93
PP + LYAV V L + N+S G Y++ V K LR
Sbjct: 681 PPLYMLYAVIVHLDTLNASFSGHYISYV-KDLR 712
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,126,719
Number of Sequences: 28952
Number of extensions: 338286
Number of successful extensions: 960
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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