Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30290
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.5  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    23   2.0  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.4  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    23   3.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 516 LSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPN 626
           L  G GF+K  E E  L     RH++    C  + P+
Sbjct: 619 LDNGVGFLKVKENEITLLVATVRHVMAPSTCQPQNPD 655


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = +3

Query: 366 TRGIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFADGSSKTRYATGLSKGFGFIKF 545
           TR IAA ++  + S  S + + DD      L  LL    D        T     F FI F
Sbjct: 247 TRRIAAVASEKVTSEKSWIALNDDYNRLCHLCFLL----DEKLSYIILTSFLNNFYFIIF 302

Query: 546 AEYEA 560
             +E+
Sbjct: 303 QVFES 307


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 726 KEPKYFSEIFGCNILRTTADEYLS 655
           K  K F+E+FG ++L    + +LS
Sbjct: 235 KSVKLFNEVFGVSLLVLFGNSFLS 258


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 726 KEPKYFSEIFGCNILRTTADEYLS 655
           K  K F+E+FG ++L    + +LS
Sbjct: 253 KSVKLFNEVFGVSLLVLFGNSFLS 276


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 616  RTSHQRPSIMCRRPNARS 563
            R S  RPS+  R PN ++
Sbjct: 1432 RVSQARPSVQLRYPNGKA 1449


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 616  RTSHQRPSIMCRRPNARS 563
            R S  RPS+  R PN ++
Sbjct: 1432 RVSQARPSVQLRYPNGKA 1449


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,627
Number of Sequences: 336
Number of extensions: 3213
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)