Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30290
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 41 2e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 30 0.31
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.94
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 28 1.2
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.2
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 28 1.6
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 28 1.6
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 27 2.2
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 2.9
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 27 3.8
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 27 3.8
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.0
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 6.6
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 26 6.6
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 8.7
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 25 8.7
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 8.7
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 8.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 8.7
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 373 ESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDT 507
E+ P + + GL W+TT++++RDYF FG++L V RD+
Sbjct: 154 ETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDS 198
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 611
TG S+GFGF+ F + + + H +DG+ D
Sbjct: 200 TGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIID 233
Score = 29.9 bits (64), Expect = 0.40
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 358 AFPRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
A PR E + + + + V G+P TEE R++F+ FG +L + D P+
Sbjct: 237 AIPREE----QEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPR 288
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 30.3 bits (65), Expect = 0.31
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRA 572
+G+SKG+GF+ F + EA +RA
Sbjct: 421 SGISKGYGFVAFRQIEAAVRA 441
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.7 bits (61), Expect = 0.94
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCDVRIPNGKDGSSTAHSKG 662
+G KGFG++ F++ ++ + + H I GR C + + G + +G
Sbjct: 403 SGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPRTGGGSRGGRG 454
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRR--HMIDGRWCDVRIPNGKDGSSTAHSKGIRRPLYG 683
+G SKG+G++ F EA A+ IDGR ++ + N + + +++ R +G
Sbjct: 300 SGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQ-RAGNFG 358
Query: 684 EYYSRRS 704
+ S S
Sbjct: 359 DQLSEPS 365
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 391 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDT 507
P + + V LP T + +R YF FG++L QV ++
Sbjct: 173 PNNTAVYVHQLPENITTQELRSYFLHFGEILYTQVNNNS 211
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
+IV G+ + TEE V D F+ FG + + + D Y K
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVK 51
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPNGKDGSSTAHSK 659
TG KGFGF+ F + + ++A+ H W R+ G+D S +K
Sbjct: 265 TGKCKGFGFVDFPDIDTCMKAMELGH---NSW---RLEYGEDRSKRMRNK 308
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRAL--GRRHMIDGRWCDVRIPNGKDGSSTA 650
TGLS+ +GF++F+ + Q AL + ++ GR + + + K +S A
Sbjct: 220 TGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIA 268
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 104 EEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDGSL 217
E + R+S ++ + P+S +P++ PTE+ GSL
Sbjct: 195 EALSSSRFSRPQVGQQQPLSSAFPFQPVKQPTEQPGSL 232
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
L V + + T+E V+ F FGD+ V ++RD
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD 374
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 110 VEGQRWSVSKMTEYVPVSEGEQDEPIELPTEE 205
V Q W + E SE E+ E +E PTEE
Sbjct: 424 VSTQHWGELEEFEEEESSEEEESEDVEYPTEE 455
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 3.8
Identities = 25/81 (30%), Positives = 36/81 (44%)
Frame = +1
Query: 331 GWPAYRYWCAFPRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTP 510
G YR+ P P P P L+VLG W T +R +S ++++V +P
Sbjct: 71 GANVYRF--RHPDPHQPLPDPSKKTLVVLGAGWGAT-SILRTIDTSLFNVIVV-----SP 122
Query: 511 PDYPKVLASSNSPSTKLNCVH 573
+Y L +S PST VH
Sbjct: 123 RNY--FLFTSLLPSTATGSVH 141
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 513 GLSKGFGFIKFAEYEAQLRAL 575
G SKGFGF++F ++ L AL
Sbjct: 536 GRSKGFGFMQFISHKYALMAL 556
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 158 VSEGEQDEPIELPTEEDG 211
+ EGE+DE +ELP E G
Sbjct: 173 LEEGEEDELLELPPETSG 190
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 522 KGFGFIKFAEYEAQLRAL 575
+GFGF+ FA E Q RA+
Sbjct: 258 RGFGFVSFANAEDQSRAI 275
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 454 DYFS--SFGDLLMVQVKRDTPPDYPKVLASSNSP 549
D+FS F DL ++ DTP D+P + S + P
Sbjct: 998 DFFSHRKFNDLSS-EISEDTPTDFPDFVKSLDRP 1030
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
L V LP E+ +R YFS FG +L +++ R+
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRN 139
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +3
Query: 483 DGSSKTRYATGL-SKGFGFIKFAEYEAQLRALGRRHMIDGR---WCD 611
+ +K Y + L S GF FIKF ++ GR H G+ +CD
Sbjct: 188 ENDNKAPYFSLLYSDGFDFIKFLHVCVCVKCHGREHRSSGKNFVYCD 234
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 614 NIAPAPVYHVSAA*CTQLSFVLGEFDEAKTFG 519
N A P+YHV A+ C S + D AKT+G
Sbjct: 470 NGALLPIYHVDASAC---SISISLMDIAKTYG 498
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 457 YFSSFGDLLMVQVKRDTPPDYPKVLASSNSPS 552
+ SF D+++ + TPP P ++S+SPS
Sbjct: 443 WIKSFKDIILEKELARTPPSSPARNSASSSPS 474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,968
Number of Sequences: 5004
Number of extensions: 54167
Number of successful extensions: 208
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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