Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30290
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 42 5e-04
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 40 0.003
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 38 0.011
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_38710| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-09) 32 0.57
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.57
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 31 1.00
SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_51024| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-08) 31 1.3
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 30 1.7
SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 29 3.0
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 29 3.0
SB_52554| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 29 4.0
SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 29 5.3
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62) 28 7.0
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 28 7.0
SB_13176| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0) 28 7.0
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 28 9.3
SB_15552| Best HMM Match : SCP (HMM E-Value=3.6) 28 9.3
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +1
Query: 403 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
DLIVLGLP+ TTE +++YF+ FG++ +VK D
Sbjct: 116 DLIVLGLPYATTESEMKEYFTRFGEIDFCEVKLD 149
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPNGKD 635
T S+GFGF++F + E L H I GR C+VR+P K+
Sbjct: 152 TRRSRGFGFVRFKKDEDAKNVLSTSHRIQGRLCEVRLPRPKE 193
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Frame = +2
Query: 140 MTE-YVPVSEGEQ--DEPIELPTEEDGSLLLSTVAAQF 244
MT+ YV V + E D+ IE+ EEDG+LLLS V QF
Sbjct: 1 MTQIYVRVVDDETCPDQAIEIEAEEDGTLLLSNVNGQF 38
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKR 501
L V LP TTE+ + +YF+ FG++ V + +
Sbjct: 201 LFVGRLPESTTEKTLMEYFAQFGEVTDVYIPK 232
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 501 RYATGLSKGFGFIKFAEYEAQLRALGRRHMIDGRW 605
R TG SKGFG++ + E+ RAL H+IDG+W
Sbjct: 96 RTQTGKSKGFGYVTYENAESAQRALAGTHIIDGKW 130
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPKVLA 534
L V GL ++TT+E++++YFS +G+L+ V +K D P+ A
Sbjct: 31 LFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFA 73
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 322 PAEGWPAYRYWCAFPRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLL-MVQVK 498
P + + A R + P S + R + + GL W TTEE ++DYFS +G ++ V +K
Sbjct: 26 PFQCFSASRPFALLPSKMSESEKLR--KIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMK 83
Query: 499 RD 504
RD
Sbjct: 84 RD 85
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 35.9 bits (79), Expect = 0.035
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Frame = +3
Query: 507 ATGLSKGFGFIKFAEYEAQLRALGRR-----HMIDGRWCDVR--IPNGKDGSSTAHSK 659
AT S+GFG++ FA+Y+ L + H IDG+ +V+ IP D S+T+H K
Sbjct: 50 ATKKSRGFGYVTFADYKVTRNVLKDKVENGAHRIDGKEVEVKRAIPR-DDNSATSHEK 106
Score = 31.9 bits (69), Expect = 0.57
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +1
Query: 367 RAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDT 507
R E+ PR L V GL +TT E +R+YF ++G+L V V D+
Sbjct: 4 RQENTNNDPRAK-LFVGGLNRETTNETLREYFEAYGELTDVVVICDS 49
>SB_38710| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-09)
Length = 435
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -3
Query: 187 NGLVLLALAYRHVLRHLAHRPTLTFHFLISFIYSHGFETLVKS 59
NG+VL + R V+ A + TLT HF+ S YS +LV +
Sbjct: 67 NGMVLYLVKQRPVVSRRAFQRTLTRHFIRSLAYSSLLSSLVST 109
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 31.9 bits (69), Expect = 0.57
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Frame = +1
Query: 337 PAYRYWCAFPRAESPPPRPR-----CSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKR 501
PA + A R S P P+ + V GL T EE ++DYF FG++ V++ R
Sbjct: 54 PASKPLVAVSRYNSTLPSPKDIEKNSRSVFVGGLASGTDEEGLKDYFEQFGEVESVRIMR 113
Query: 502 ---DTPPDYPKVLASSNSPSTKL 561
+Y VL + PS ++
Sbjct: 114 TFLGYSRNYGFVLFKDDGPSKEV 136
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 31.5 bits (68), Expect = 0.76
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 358 AFPRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQV 495
+ P ++P R + L V GL K TE+ +RD+F FG+L + +
Sbjct: 291 SMPMLDTPTDRS-ITTLYVGGLEGKVTEQDLRDHFYQFGELRSISM 335
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 31.1 bits (67), Expect = 1.00
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRI-PNGKDGSSTAHS 656
T SKG+GF++F E EA RA+ + + + ++I P + G S+A+S
Sbjct: 279 TNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKIGPVTERGDSSAYS 328
>SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 31.1 bits (67), Expect = 1.00
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -2
Query: 656 RMSRRRAVLAVRDANIAPAPVYHVSAA*CTQLSFVLGEFDEAKTFG 519
R+ RR+ +L+ D N AP P +S CT L E D++ FG
Sbjct: 325 RVPRRQEILSCYDGNRAPRPSTALSTDKCTLAKKGLPERDQSAMFG 370
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 31.1 bits (67), Expect = 1.00
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = +1
Query: 382 PPRPRCSD--LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKR 501
P R +D + + GL + TTEE +++YFS++G MV+VK+
Sbjct: 194 PQRGSANDGKVFIGGLAFGTTEEDLKEYFSTYG---MVEVKK 232
>SB_51024| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-08)
Length = 342
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -3
Query: 187 NGLVLLALAYRHVLRHLAHRPTLTFHFLISFIYSHGFETLVKS 59
NG+VL + R V+ A + TLT HF+ S YS +LV +
Sbjct: 28 NGMVLYLVKQRPVVSRRALQRTLTRHFIRSLAYSSLLTSLVST 70
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 358 AFPRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+F PP + L V L ++TT E ++ F +GDL + + RD
Sbjct: 2 SFDSQRGPPEIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRD 50
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPKVLASSNSPSTKL 561
+ + GL T+EE ++ YFS FG + D + VL S +S T +
Sbjct: 185 IFIGGLSTNTSEEDMKKYFSQFGKVSCEYETEDVKDELAAVLISVHSNGTHI 236
>SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 503 IRHRTIQRFWLHQIRRVRSSTACIRPPTHDRRALVR 610
+R + ++R +L IRR R S A + PT R++L R
Sbjct: 1038 LRRKELRRAFLAIIRRTRISNAQLSMPTESRKSLAR 1073
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
L V G+P+++ ++A+R +F+ FG++ V +D
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKD 44
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 367 RAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
R PPPR + V GLP + + ++D+ GD+L V +D
Sbjct: 369 RGRGPPPRRSDFRVQVSGLPPTGSWQDLKDHMREAGDVLFTDVFKD 414
>SB_52554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 29.1 bits (62), Expect = 4.0
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +1
Query: 349 YWCAFP-RAESPPPR--PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDT-PPD 516
Y+ A+ R+ SPPP+ P D L V+D + + D L ++V + P +
Sbjct: 43 YYLAYGCRSSSPPPKALPTLVDSCCKILSANFPISYVQDQWKTVPDELQLKVISSSFPAE 102
Query: 517 YPKVLASSNSPST-KLNCV 570
+P + SSNS S+ + C+
Sbjct: 103 FPATVGSSNSDSSDRFYCI 121
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 409 IVLG-LPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ LG LP+ TTE+ VR +F S+G L + +K +
Sbjct: 5 VYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNN 37
>SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1218
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +2
Query: 23 DLQNNILLIQELGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTE 202
D++ L QEL + L+ + +EE+ Q ++K+TE V E E E + E
Sbjct: 477 DIKELTLKDQELDVTVELRGAEKQQLEEEILNQTHQITKLTEQVTGLETEIKEVRQQKDE 536
Query: 203 EDGSLLLS 226
+ L LS
Sbjct: 537 INVHLSLS 544
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 501 RYATGLSKGFGFIKFAEYEAQLRALGR-RHMID 596
R +G SKGF F++ + EA LGR H+ID
Sbjct: 76 RTLSGKSKGFAFVRLRKKEAVESVLGRDDHVID 108
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = +3
Query: 519 SKGFGFIKFAEYE-AQ--LRALGRRHMIDGRWCDV--RIPNGKDGSSTAHSKGIRRPLYG 683
S+GFGF+ FA E AQ +++L + + GR + I G+DG + G R G
Sbjct: 98 SRGFGFVTFANPEDAQTAVKSLNGKE-VQGRTLKIAPSISRGRDGGGGGYRGGYRGGYRG 156
Query: 684 EYYSRRSQ 707
Y R +
Sbjct: 157 GYRGGRDR 164
>SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62)
Length = 631
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 59 GLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDG 211
GL Q V V +D E+E Q S S + E E + P E +EDG
Sbjct: 163 GLEQREDDVEVMDQDSEIEDQEGSESMDEDQGDEDEVEDEVPEEGDNDEDG 213
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRR-HMIDGR 602
+G SK +GF+ F + EA +A+G + H I+G+
Sbjct: 99 SGRSKKYGFVFFKDEEACEKAMGNQPHFIEGQ 130
>SB_13176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 35 NILLIQELGLNQSLKA--VRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEED 208
NI+ + E G + S K ++ KRDE+ + SK + V++GE+ + ++
Sbjct: 98 NIMELPETGKSTSKKKNLTKISKRDEKANQKTTPASKRLKGKTVAKGERRQAAKVSMRSS 157
Query: 209 GSLLLST 229
+ LST
Sbjct: 158 QTRTLST 164
>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
Length = 1066
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 379 PPPRPRCSDLIVLGLPWKTT 438
P P RC L +L +PWK T
Sbjct: 914 PDPSARCDPLSILAVPWKWT 933
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRAL 575
TG SKGF FI FA ++A A+
Sbjct: 138 TGNSKGFAFINFASFDASDAAI 159
>SB_15552| Best HMM Match : SCP (HMM E-Value=3.6)
Length = 154
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 530 WLHQIRRVRSSTACIRPPTH 589
W+ Q+ + +SS AC PP H
Sbjct: 87 WIGQLGKYKSSGACTNPPAH 106
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/55 (25%), Positives = 31/55 (56%)
Frame = +2
Query: 38 ILLIQELGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTE 202
++ + E+GL ++L +VR+D +DEE+ + + E V + + +E+ T+
Sbjct: 676 VMQVAEIGLAKAL-SVRLDSKDEEIAELQKKLDFAKEQVQALKNADVKTVEMETK 729
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,755,974
Number of Sequences: 59808
Number of extensions: 457285
Number of successful extensions: 1488
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -