Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30290
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 50 2e-06
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 38 0.008
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 38 0.008
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 38 0.008
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 38 0.008
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 38 0.008
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 37 0.018
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 37 0.018
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 36 0.023
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 36 0.023
Z49910-6|CAH04715.1| 124|Caenorhabditis elegans Hypothetical pr... 34 0.094
Z81142-1|CAB03502.1| 334|Caenorhabditis elegans Hypothetical pr... 31 0.87
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 31 0.87
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 31 0.87
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 31 0.87
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 31 0.87
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 30 1.5
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 30 1.5
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 30 1.5
AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya bi... 30 2.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.5
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr... 29 4.7
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 29 4.7
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 29 4.7
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 29 4.7
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik... 29 4.7
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 29 4.7
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 29 4.7
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 29 4.7
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 28 8.1
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 28 8.1
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/46 (47%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +3
Query: 501 RYATGLSKGFGFIKFAEYEAQLRALG-RRHMIDGRWCDVRIPNGKD 635
R + G SKGFGF++ + Q + L +HMIDGR CDV++P+G+D
Sbjct: 206 RKSDGNSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCDVKVPDGRD 251
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = +1
Query: 403 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPD---YPKVLASSNSPSTKLNCVH 573
DLIVLG+ +KTT+E + YF G ++ ++KR + + + V SS K+ +
Sbjct: 174 DLIVLGVDFKTTDECFQKYFEDIGTVVFCEIKRKSDGNSKGFGFVRMSSVGEQNKVLAI- 232
Query: 574 *XXXXXXXXXXXMFASXXXXXXXXXLIRKVFVGRCTENITAEDLREV 714
+ I ++FVGR T+ + LR+V
Sbjct: 233 -PQHMIDGRRCDVKVPDGRDKQGRPSISRIFVGRLTDKVDEHQLRKV 278
Score = 34.3 bits (75), Expect = 0.094
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +2
Query: 146 EYVPVSEGEQDEPIELPTEEDGSLLLSTVAAQF 244
E++ V + DEPIELPT DG +L++T+ A F
Sbjct: 46 EFITVQDPNGDEPIELPT-VDGVVLMTTLQASF 77
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 507 ATGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGRWCDVRIPNGKDGSSTAHSKGIRRPLYG 683
AT +GFGF+ F ++++ + L + HM++G CDVR KD S A R G
Sbjct: 150 ATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQMNRDRETRGG 209
Query: 684 EYYSRRSQR 710
SR QR
Sbjct: 210 R--SRDGQR 216
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 510 TGLSKGFGFIKFA-EYEAQLRALGRRHMIDGRWCDVRIPNGKDGSSTAHSKGIRRPLY 680
T S+GFGF+ F+ + E R H+IDG+ D + +D + + S + LY
Sbjct: 60 TKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLY 117
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ V GL TT++ +R+++S FG++ + V RD
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRD 57
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 507 ATGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGRWCDVRIPNGKDGSSTAHSKGIRRPLYG 683
AT +GFGF+ F ++++ + L + HM++G CDVR KD S A R G
Sbjct: 112 ATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQMNRDRETRGG 171
Query: 684 EYYSRRSQR 710
SR QR
Sbjct: 172 R--SRDGQR 178
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 510 TGLSKGFGFIKFA-EYEAQLRALGRRHMIDGRWCDVRIPNGKDGSSTAHSKGIRRPLY 680
T S+GFGF+ F+ + E R H+IDG+ D + +D + + S + LY
Sbjct: 22 TKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLY 79
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 507 ATGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGRWCDVRIPNGKDGSSTAHSKGIRRPLYG 683
AT +GFGF+ F ++++ + L + HM++G CDVR KD S A R G
Sbjct: 112 ATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQMNRDRETRGG 171
Query: 684 EYYSRRSQR 710
SR QR
Sbjct: 172 R--SRDGQR 178
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 510 TGLSKGFGFIKFA-EYEAQLRALGRRHMIDGRWCDVRIPNGKDGSSTAHSKGIRRPLY 680
T S+GFGF+ F+ + E R H+IDG+ D + +D + + S + LY
Sbjct: 22 TKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLY 79
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 507 ATGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGRWCDVRIPNGKDGSSTAHSKGIRRPLYG 683
AT +GFGF+ F ++++ + L + HM++G CDVR KD S A R G
Sbjct: 150 ATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQMNRDRETRGG 209
Query: 684 EYYSRRSQR 710
SR QR
Sbjct: 210 R--SRDGQR 216
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 510 TGLSKGFGFIKFA-EYEAQLRALGRRHMIDGRWCDVRIPNGKDGSSTAHSKGIRRPLY 680
T S+GFGF+ F+ + E R H+IDG+ D + +D + + S + LY
Sbjct: 60 TKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLY 117
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ V GL TT++ +R+++S FG++ + V RD
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRD 57
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 507 ATGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGRWCDVRIPNGKDGSSTAHSKGIRRPLYG 683
AT +GFGF+ F ++++ + L + HM++G CDVR KD S A R G
Sbjct: 150 ATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQMNRDRETRGG 209
Query: 684 EYYSRRSQR 710
SR QR
Sbjct: 210 R--SRDGQR 216
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 510 TGLSKGFGFIKFA-EYEAQLRALGRRHMIDGRWCDVRIPNGKDGSSTAHSKGIRRPLY 680
T S+GFGF+ F+ + E R H+IDG+ D + +D + + S + LY
Sbjct: 60 TKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLY 117
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ V GL TT++ +R+++S FG++ + V RD
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRD 57
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 36.7 bits (81), Expect = 0.018
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ + GL W+TT E +RDYF FG++ V RD
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRD 79
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 507 ATGLSKGFGFIKFAEYEAQLRAL-GRRHMIDGRWCDVRI 620
AT ++GFGFI F + + + L R H +DG+ D ++
Sbjct: 81 ATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKV 119
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 36.7 bits (81), Expect = 0.018
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ + GL W+TT E +RDYF FG++ V RD
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRD 79
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 507 ATGLSKGFGFIKFAEYEAQLRAL-GRRHMIDGRWCDVRI 620
AT ++GFGFI F + + + L R H +DG+ D ++
Sbjct: 81 ATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKV 119
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 643 DEPSLPFGMRTSHQRPSIMCRRPNARS*ASYSANLMKPKPLDSPVA 506
+EP G++TS Q PS +RP+ A S+N++ P P +P +
Sbjct: 1465 NEPDQTTGLKTSQQPPSFAAKRPSFGRQAQSSSNVIPPAPAPTPTS 1510
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 643 DEPSLPFGMRTSHQRPSIMCRRPNARS*ASYSANLMKPKPLDSPVA 506
+EP G++TS Q PS +RP+ A S+N++ P P +P +
Sbjct: 1465 NEPDQTTGLKTSQQPPSFAAKRPSFGRQAQSSSNVIPPAPAPTPTS 1510
>Z49910-6|CAH04715.1| 124|Caenorhabditis elegans Hypothetical
protein F44G4.4b protein.
Length = 124
Score = 34.3 bits (75), Expect = 0.094
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +2
Query: 146 EYVPVSEGEQDEPIELPTEEDGSLLLSTVAAQF 244
E++ V + DEPIELPT DG +L++T+ A F
Sbjct: 46 EFITVQDPNGDEPIELPT-VDGVVLMTTLQASF 77
>Z81142-1|CAB03502.1| 334|Caenorhabditis elegans Hypothetical
protein ZK1037.3 protein.
Length = 334
Score = 31.1 bits (67), Expect = 0.87
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 645 TAHSKGIRRPLYGEYY 692
T+H+KG+RRP +G YY
Sbjct: 34 TSHTKGVRRPFWGAYY 49
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 418 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
GLP T E + FS FG +L+V + D YPK
Sbjct: 325 GLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPK 360
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 418 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
GLP T E + FS FG +L+V + D YPK
Sbjct: 325 GLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPK 360
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 418 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
GLP T E + FS FG +L+V + D YPK
Sbjct: 111 GLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPK 146
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 418 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
GLP T E + FS FG +L+V + D YPK
Sbjct: 325 GLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPK 360
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDL 480
+ V GLP+ T+++ + +YF FGD+
Sbjct: 37 IFVGGLPYHTSDKTLHEYFEQFGDI 61
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 418 GLPWKTTEEAVRDYFSSFG 474
GLPW+ TE+ +RD+F + G
Sbjct: 11 GLPWEATEQELRDFFGNNG 29
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 418 GLPWKTTEEAVRDYFSSFG 474
GLPW+ TE+ +RD+F + G
Sbjct: 11 GLPWEATEQELRDFFGNNG 29
>AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya
binding family protein 3 protein.
Length = 751
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 364 PRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFG 474
PR + P R + V G+PW TE A++D F FG
Sbjct: 285 PRDYTSPTFSR--KIFVGGVPWDITEAALKDSFGEFG 319
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRAL 575
+G SKGF FI FA +EA AL
Sbjct: 138 SGTSKGFAFINFASFEASDTAL 159
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRAL 575
+G SKGF FI FA +EA AL
Sbjct: 148 SGTSKGFAFINFASFEASDTAL 169
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 424 PWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPKVLA 534
P++TTEE + ++FSS G + V++ D P+ A
Sbjct: 13 PFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFA 49
>Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical
protein T07F10.3 protein.
Length = 371
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 486 GSSKTRYATGLSKGFGFIKFAEYEAQLRALGRRH 587
G+ R+ G SKG GF++F Q AL H
Sbjct: 184 GAKMFRFVDGSSKGSGFVRFGNQTDQQMALVEMH 217
>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical protein
F01G4.1 protein.
Length = 1474
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +2
Query: 26 LQNNILLIQELGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEE 205
++ IL LN K ++ K D+ G +M E + ++GE++E E+P +E
Sbjct: 980 VEEKILAAARYKLNVDEKVIQAGKFDQRSTGAERK--QMLEQIIQADGEEEEEEEVPDDE 1037
Query: 206 DGSLLLSTVAAQF 244
+ +++ +F
Sbjct: 1038 TVNQMVARSEEEF 1050
>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical protein
F01G4.1 protein.
Length = 1474
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +2
Query: 26 LQNNILLIQELGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEE 205
++ IL LN K ++ K D+ G +M E + ++GE++E E+P +E
Sbjct: 980 VEEKILAAARYKLNVDEKVIQAGKFDQRSTGAERK--QMLEQIIQADGEEEEEEEVPDDE 1037
Query: 206 DGSLLLSTVAAQF 244
+ +++ +F
Sbjct: 1038 TVNQMVARSEEEF 1050
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
protein B0496.3a protein.
Length = 1551
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 11 NFWLDLQNNILLIQELGLNQSLKAVRVDKRDE 106
++WL+L+ N+ +IQEL NQ + + +R+E
Sbjct: 323 HWWLNLEENMPVIQELPENQIIDHTPLTEREE 354
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
protein B0496.3b protein.
Length = 1592
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 11 NFWLDLQNNILLIQELGLNQSLKAVRVDKRDE 106
++WL+L+ N+ +IQEL NQ + + +R+E
Sbjct: 323 HWWLNLEENMPVIQELPENQIIDHTPLTEREE 354
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 519 SKGFGFIKFAEYEAQLRALGRR--HMIDGRWCDVRIPNGKDGSSTAHSKGIRRPLYGEYY 692
SKGFGF++F E AL R ++DGR ++R+ K + +G R G
Sbjct: 59 SKGFGFVRFYERRDAEHALDRTDGKLVDGR--ELRVTLAK-YDRPSDERGGRGGGGGRRR 115
Query: 693 SRRSQRSTSAP 725
SR +R + +P
Sbjct: 116 SRSPRRRSRSP 126
>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
protein protein.
Length = 1474
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +2
Query: 26 LQNNILLIQELGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEE 205
++ IL LN K ++ K D+ G +M E + ++GE++E E+P +E
Sbjct: 980 VEEKILAAARYKLNVDEKVIQAGKFDQRSTGAERK--QMLEQIIQADGEEEEEEEVPDDE 1037
Query: 206 DGSLLLSTVAAQF 244
+ +++ +F
Sbjct: 1038 TVNQMVARSEEEF 1050
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 391 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
P+ L + GL TT+E + +YFS +G ++ V RD
Sbjct: 46 PQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRD 83
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 391 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
P+ L + GL TT+E + +YFS +G ++ V RD
Sbjct: 66 PQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRD 103
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 391 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
P+ L + GL TT+E + +YFS +G ++ V RD
Sbjct: 67 PQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRD 104
>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
protein F59A6.5 protein.
Length = 1286
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 5 YKNFWLDLQNNILLIQELGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQD-E 181
YK W QN+ + L + K ++DK +EE++ ++ +++ E V + D +
Sbjct: 604 YKRSW---QNSQETCERLERESATKEDKLDKLEEELQEKKQQIAESKELVTYLHSQIDAK 660
Query: 182 PIELPTEEDGSLLLSTVA 235
+ P S LLSTV+
Sbjct: 661 QTKQPKLGRRSTLLSTVS 678
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCDV 614
TGL +GF I F + +A+ +R H+IDG DV
Sbjct: 62 TGLHRGFASITFDSKDGANKAIEQRPHVIDGDRVDV 97
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +2
Query: 26 LQNNILLIQELGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEE 205
++ IL LN K ++ K D G ++ E + +E E +E E+P +E
Sbjct: 813 VEEKILAAARYKLNVDEKVIQAGKFDNRSTGAERR--EILENIIKTENESEEDEEVPNDE 870
Query: 206 DGSLLLSTVAAQF 244
D + +LS +F
Sbjct: 871 DINDILSRSEEEF 883
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,757,711
Number of Sequences: 27780
Number of extensions: 326644
Number of successful extensions: 1268
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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