Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30290
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 40 0.002
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 40 0.002
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 40 0.002
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 40 0.002
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 39 0.003
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 39 0.003
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 38 0.009
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 37 0.012
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 37 0.012
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 37 0.012
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 37 0.016
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 36 0.022
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 36 0.022
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 36 0.029
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 36 0.029
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 36 0.038
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 35 0.050
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 35 0.050
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 35 0.050
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 35 0.066
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 35 0.066
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 35 0.066
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 35 0.066
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 34 0.088
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 34 0.088
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 34 0.088
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 34 0.088
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 33 0.15
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 33 0.20
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 33 0.20
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 33 0.27
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 32 0.35
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 32 0.35
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 32 0.47
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 32 0.47
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 31 0.62
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 31 0.62
At5g51300.2 68418.m06360 splicing factor-related contains simila... 31 0.82
At5g51300.1 68418.m06359 splicing factor-related contains simila... 31 0.82
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 31 0.82
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 31 0.82
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 31 1.1
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 30 1.4
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 30 1.4
At3g32930.1 68416.m04173 expressed protein 30 1.4
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 30 1.4
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 30 1.4
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 30 1.4
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 30 1.4
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 30 1.4
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 30 1.4
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 30 1.9
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 30 1.9
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 30 1.9
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 29 2.5
At4g21930.1 68417.m03172 expressed protein contains Pfam profile... 29 2.5
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 29 2.5
At1g68150.1 68414.m07785 WRKY family transcription factor simila... 29 2.5
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 29 3.3
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 29 3.3
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 29 3.3
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 29 3.3
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 29 3.3
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 29 4.4
At3g59640.1 68416.m06654 glycine-rich protein 29 4.4
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 29 4.4
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 29 4.4
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 29 4.4
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 29 4.4
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 28 5.8
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 28 5.8
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 28 5.8
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 28 5.8
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 28 5.8
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 28 5.8
At3g49060.1 68416.m05360 protein kinase family protein / U-box d... 28 5.8
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 28 7.6
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 28 7.6
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 28 7.6
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 28 7.6
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 28 7.6
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 28 7.6
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
L + G+ W T EE +RDYFS++GD++ + RD
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 507 ATGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 617
ATG ++GFGFI FA+ R + +H+IDGR + +
Sbjct: 42 ATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAK 78
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 394 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
R + V GLP TEE ++YF FG + V V D P+
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPR 151
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
L + G+ W T EE +RDYFS++GD++ + RD
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 507 ATGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 617
ATG ++GFGFI FA+ R + +H+IDGR + +
Sbjct: 42 ATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAK 78
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 394 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
R + V GLP TEE ++YF FG + V V D P+
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPR 151
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
L + G+ W T EE +RDYFS++GD++ + RD
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 507 ATGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 617
ATG ++GFGFI FA+ R + +H+IDGR + +
Sbjct: 42 ATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAK 78
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 394 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
R + V GLP TEE ++YF FG + V V D P+
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPR 151
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
L + G+ W T E +R+YFS+FG++L V V R+ P+
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPR 47
Score = 35.9 bits (79), Expect = 0.029
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 507 ATGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPNGKDGSSTAHSKG 662
ATG +GFGF+ F++ R L +H ID R DV+ ++ S A G
Sbjct: 42 ATGRPRGFGFVAFSDPAVIDRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSG 93
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
L + G+ W+T+E+ +RDYF SFG++L + +D
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKD 40
Score = 34.3 bits (75), Expect = 0.088
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 507 ATGLSKGFGFIKFAEYEAQLRALGRRHMIDGR 602
ATG ++GFGF+ FA+ R + +H+IDG+
Sbjct: 42 ATGRARGFGFVVFADPNVAERVVLLKHIIDGK 73
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
L + G+ W+T+E+ +RDYF SFG++L + +D
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKD 40
Score = 34.3 bits (75), Expect = 0.088
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 507 ATGLSKGFGFIKFAEYEAQLRALGRRHMIDGR 602
ATG ++GFGF+ FA+ R + +H+IDG+
Sbjct: 42 ATGRARGFGFVVFADPNVAERVVLLKHIIDGK 73
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
L+VLG+PW + ++DY S FGDL V +D
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKD 37
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 507 ATGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPNGKD 635
+TG S+GFG++ FA E AL H + R +V++ K+
Sbjct: 39 STGRSRGFGYVTFASAEDAKNALKGEHFLGNRILEVKVATPKE 81
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 37.1 bits (82), Expect = 0.012
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
L + G+ W T EE +++YFSSFG+++ + +D
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 617
TG ++GFGF+ FA+ + +H IDGR + +
Sbjct: 43 TGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAK 78
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +1
Query: 376 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
SP R + V GLP TE + YF FG V V D P+
Sbjct: 100 SPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPR 149
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 37.1 bits (82), Expect = 0.012
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
L + G+ W T EE +++YFSSFG+++ + +D
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 617
TG ++GFGF+ FA+ + +H IDGR + +
Sbjct: 43 TGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAK 78
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +1
Query: 376 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
SP R + V GLP TE + YF FG V V D P+
Sbjct: 100 SPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPR 149
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +1
Query: 364 PRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPKVLA 534
P + S P+ + L V GL ++TTE+ +RD F FG+L+ + + D + PK A
Sbjct: 68 PPSSSSGPKTK---LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFA 121
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 36.7 bits (81), Expect = 0.016
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +1
Query: 340 AYRYWCAFPRAESPPP-RPRC---SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDT 507
A R+ P+AES P RP+ ++L V GL +TT E +R F+ FG++ +V D
Sbjct: 32 ASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDR 91
Query: 508 PPDYPK 525
Y K
Sbjct: 92 VSGYSK 97
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/83 (28%), Positives = 37/83 (44%)
Frame = +3
Query: 363 PTRGIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFADGSSKTRYATGLSKGFGFIK 542
P R A ST + S S+ T + R+ AD T +G SKGFGF++
Sbjct: 47 PARPQAEPSTNLFVSGLSKRTTSEGLRTA---FAQFGEVADAKVVTDRVSGYSKGFGFVR 103
Query: 543 FAEYEAQLRALGRRHMIDGRWCD 611
+A E + + +DG++ D
Sbjct: 104 YATLEDSAKGIAG---MDGKFLD 123
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 36.3 bits (80), Expect = 0.022
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 390 TTMLRSYSSRLTMEDDRRSCTRLLLLLWRFADGSSKTRYATGLSKGFGFIKFAEYEAQLR 569
T + + + L E R + R + T TG SKG+GF+ F E EA +R
Sbjct: 19 TKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMR 78
Query: 570 ALGRRH-MIDGR 602
A + +IDGR
Sbjct: 79 ACQNMNPVIDGR 90
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 36.3 bits (80), Expect = 0.022
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 498 TRYATGLSKGFGFIKFAEYEAQLRALGRRH-MIDGRWCDVRIPN-GKDGSSTAHSKG 662
T ATG SKG+GF+ F + ++ RA+ + +IDGR + I + G+ ST +G
Sbjct: 50 TDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRG 106
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ V GL W+T + +R YF FG++L + D
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITD 51
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 617
TG SKG+GF++FA+ Q+RA+ ++G++C R
Sbjct: 192 TGRSKGYGFVRFADENEQMRAMTE---MNGQYCSTR 224
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 35.9 bits (79), Expect = 0.029
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
L + G+ W T EE +++YF +GDL+ + RD
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRD 49
Score = 35.5 bits (78), Expect = 0.038
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 617
TG ++GFGFI FA+ R + +H+IDGR + +
Sbjct: 52 TGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAK 87
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 394 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
R + V GLP TE ++YF FG + V V D P+
Sbjct: 120 RTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPR 163
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 35.5 bits (78), Expect = 0.038
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 483 DGSSKTRYATGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--IPNG-KDGSSTAH 653
D T TG +GFGF+ FA+ + L H+ID R D++ +P G KD A
Sbjct: 94 DSVIMTDRITGNPRGFGFVTFADSAVAEKVLEEDHVIDDRKVDLKRTLPRGDKDTDIKAV 153
Query: 654 SK 659
SK
Sbjct: 154 SK 155
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
L V G+ W+TT E +YF FG+++ + D P+
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPR 107
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 35.1 bits (77), Expect = 0.050
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 507 ATGLSKGFGFIKFAEYEAQLRAL-GRRHMIDGRWCDVRI 620
AT SKGFGF+ F E E+ RA H IDGR + ++
Sbjct: 45 ATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKL 83
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 385 PRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
P R + + V GLPW T E + YF FG+++ +V D
Sbjct: 4 PNDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCD 43
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 35.1 bits (77), Expect = 0.050
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 617
TG SKG+GF++FA+ Q+RA+ ++G++C R
Sbjct: 211 TGRSKGYGFVRFADESEQIRAMTE---MNGQYCSSR 243
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 35.1 bits (77), Expect = 0.050
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 400 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
S L + GL W E++++D FSSFG++ V++ D
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYD 75
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 34.7 bits (76), Expect = 0.066
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 400 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ + V GLP+ TEEAVR FS +G +L V++ D
Sbjct: 7 NSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVND 41
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 34.7 bits (76), Expect = 0.066
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 507 ATGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 617
+TG SKG+GF+KFAE + RA+ ++G +C R
Sbjct: 153 STGRSKGYGFVKFAEESERNRAMAE---MNGLYCSTR 186
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 34.7 bits (76), Expect = 0.066
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--IPNGKDGSSTAHSK 659
TG +GFGFI FA+ + + H+I+G+ +++ IP G G+ + K
Sbjct: 56 TGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIK 107
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ V G+P TE+ ++D+F+ +G+++ QV RD
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRD 143
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/73 (30%), Positives = 30/73 (41%)
Frame = +3
Query: 504 YATGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPNGKDGSSTAHSKGIRRPLYG 683
+ T S+GFGF+ F E L + +MID V I + S S P YG
Sbjct: 144 HETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRSP----PSYG 199
Query: 684 EYYSRRSQRSTSA 722
+ RS + A
Sbjct: 200 SHPRGRSSNDSYA 212
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 34.7 bits (76), Expect = 0.066
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--IPNGKDGSSTAHSK 659
TG +GFGFI FA+ + + H+I+G+ +++ IP G G+ + K
Sbjct: 56 TGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIK 107
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ V G+P TE+ ++D+F+ +G+++ QV RD
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRD 143
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 34.3 bits (75), Expect = 0.088
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 390 TTMLRSYSSRLTMEDDRRSCTRLLLLLWRFADGSSKTRYATGLSKGFGFIKFAEYEAQLR 569
T + + + LT R + D + + G SKG+GFI F +Y + +R
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVR 68
Query: 570 AL-GRRHMIDGR 602
AL + +IDGR
Sbjct: 69 ALQNSKPIIDGR 80
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 394 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
R + + V L W+TT + +R YF FG ++ V +T P K
Sbjct: 10 RVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSK 53
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 34.3 bits (75), Expect = 0.088
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +3
Query: 372 GIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFADGSSKTRYATGLSKGFGFIKFAE 551
GI TT + + L E + + + + T A+G SKG+GF+ F E
Sbjct: 4 GIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE 63
Query: 552 YEAQLRA-LGRRHMIDGR 602
EA A + +IDGR
Sbjct: 64 AEAARSACVDATPVIDGR 81
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ V GL W+T +E ++ +F FG++L V D
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITD 47
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 34.3 bits (75), Expect = 0.088
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +3
Query: 372 GIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFADGSSKTRYATGLSKGFGFIKFAE 551
GI TT + + L E + + + + T A+G SKG+GF+ F E
Sbjct: 4 GIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE 63
Query: 552 YEAQLRA-LGRRHMIDGR 602
EA A + +IDGR
Sbjct: 64 AEAARSACVDATPVIDGR 81
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ V GL W+T +E ++ +F FG++L V D
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITD 47
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 34.3 bits (75), Expect = 0.088
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +3
Query: 372 GIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLLWRFADGSSKTRYATGLSKGFGFIKFAE 551
GI TT + + L E + + + + T A+G SKG+GF+ F E
Sbjct: 4 GIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE 63
Query: 552 YEAQLRA-LGRRHMIDGR 602
EA A + +IDGR
Sbjct: 64 AEAARSACVDATPVIDGR 81
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ V GL W+T +E ++ +F FG++L V D
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITD 47
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPD 516
+ V GLPW T +E + ++F FG+++ V V D D
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETD 51
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRH-MIDGRWCDVRIPN-GKDGSSTAHSKG 662
TG SKG+GF+ F E ++ RA+ + +IDGR + I + G+ S +G
Sbjct: 54 TGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRG 106
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ V GL W+T + +R YF FG++L + D
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITD 51
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRH-MIDGRWCDVRIPN-GKDGSSTAHSKG 662
TG SKG+GF+ F E ++ RA+ + +IDGR + I + G+ S +G
Sbjct: 54 TGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRG 106
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ V GL W+T + +R YF FG++L + D
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITD 51
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 617
TG +GFGF+ F++ R L +H ID R DV+
Sbjct: 43 TGRPRGFGFVIFSDPSVLDRVLQEKHSIDTREVDVK 78
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/38 (34%), Positives = 26/38 (68%)
Frame = +1
Query: 391 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
P S ++V LP+ T+E+ ++ FS+FG++ V++ +D
Sbjct: 37 PLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKD 74
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 617
TG +GFGF++FA ++AL H I G+ DVR
Sbjct: 43 TGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVR 78
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
L V G+ +T+EEA++ YFS +G +L V ++ P+
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPR 47
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 394 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
R + V GL TTEE + YF FG V V D + P+
Sbjct: 118 RTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPR 161
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR--IPNGKDGSSTAHSKGI 665
TG +GFGF+ +A+ + + H+I G+ +++ IP G S+ +K I
Sbjct: 79 TGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKI 132
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVK 498
L V G+P+++TE+ +R YF S G ++ V K
Sbjct: 163 LYVGGIPYQSTEDEIRSYFRSCGVIIKVDCK 193
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ V GL W+T + ++R+YF FGD++ V D
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITD 41
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 498 TRYATGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGR 602
T ++G SKG+GF+ F + EA +A + +IDGR
Sbjct: 40 TDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGR 75
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ V GL W+T + ++R+YF FGD++ V D
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITD 41
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 498 TRYATGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGR 602
T ++G SKG+GF+ F + EA +A + +IDGR
Sbjct: 40 TDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGR 75
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALG--RRHMIDGRWCDVRI 620
TGLSKG+GF+K+A+ + A+ + +GR VRI
Sbjct: 517 TGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRI 555
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALG--RRHMIDGRWCDVRI 620
TGLSKG+GF+K+A+ + A+ + +GR VRI
Sbjct: 517 TGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRI 555
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 394 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ + + V GL W T +EA+ D+F +GD+L + D
Sbjct: 15 KLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISD 51
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 421 LPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPKVLA 534
LPW T + +R++FS FG ++ +V D +V A
Sbjct: 219 LPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFA 256
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
+ V GL W+T E +R +F +GD+L V D
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITD 58
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGR 602
TG SKG+GF+ F + EA RA + +IDGR
Sbjct: 61 TGRSKGYGFVTFRDPEAARRACVDPTPIIDGR 92
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQV 495
L + GL W T + ++RD F+ FGD++ +V
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKV 66
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQV 495
L + GL W T + ++RD F+ FGD++ +V
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKV 66
>At3g32930.1 68416.m04173 expressed protein
Length = 249
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/62 (25%), Positives = 36/62 (58%)
Frame = +2
Query: 53 ELGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDGSLLLSTV 232
+LG ++ L+ ++ +K D++ +R VSK + P ++G +P++ +G+ LL +
Sbjct: 112 DLGFSKWLQNIKGNKPDKDAADKRKLVSK---WHPTTKGTLRRNYRIPSKAEGNRLLKAI 168
Query: 233 AA 238
A+
Sbjct: 169 AS 170
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 376 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
S P RC + GL W T++ +RD F +G L+ +V D
Sbjct: 2 SEDPEYRC---FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLD 41
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRH--MIDGR 602
TG S+G+GF+++ + LRA H +IDGR
Sbjct: 101 TGASRGYGFVEYETEKEMLRAYEDAHHSLIDGR 133
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 501 RYATGLSKGFGFIKFAEYEAQLRAL 575
R TGL KGFGF++FA E AL
Sbjct: 318 RDETGLCKGFGFVQFARLEDARNAL 342
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALG-RRHMIDGR 602
TG SKG+GF+ F + EA RA +IDGR
Sbjct: 61 TGRSKGYGFVTFRDPEAARRACADPTPIIDGR 92
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRAL 575
TG +KG+GF++F++ Q+RA+
Sbjct: 193 TGRTKGYGFVRFSDESEQIRAM 214
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRAL 575
TG +KG+GF++F++ Q+RA+
Sbjct: 193 TGRTKGYGFVRFSDESEQIRAM 214
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 617
TG SKG+GF++F + + RAL ++G +C R
Sbjct: 240 TGRSKGYGFVRFGDENERSRALTE---MNGAYCSNR 272
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDL 480
+ V GLPW+TT E + F +G++
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEI 130
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDL 480
+ V GLPW+TT E + F +G++
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEI 130
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 406 LIVLGLPWK-TTEEAVRDYFSSFGDLLMVQVKR 501
+IV LP K TEE +RD FS G++ V++KR
Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKLKR 36
>At4g21930.1 68417.m03172 expressed protein contains Pfam profile
PF04520: Protein of unknown function, DUF584
Length = 183
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 290 AYASSTSACHHRRRAGRPTDIGVPSHARNRRRLDHDAPI 406
A + S RR+ GR +D+ VPS + +R + AP+
Sbjct: 59 ARSLEASGSEWRRKGGRVSDLTVPSDGQRKRHVATSAPV 97
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
L V LP+ TEE + ++FS+FG + V + D
Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLD 295
>At1g68150.1 68414.m07785 WRKY family transcription factor similar
to DNA-binding protein ABF2 GI:1159879 from [Avena
fatua]
Length = 374
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +2
Query: 56 LGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDGSLL 220
+G++ SLK + +++ +E+EG + S + + G++DE + E+D S L
Sbjct: 27 MGIDLSLK-LEAEEKKKEIEGSKHSRENKEDEEHDASGDEDEQMVKEDEDDSSSL 80
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMID--GRWCDVRIPNGKDGSSTAHSKGIR 668
TG S+GFGFI FA+ A ++ H D R V K G S G R
Sbjct: 44 TGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSR 98
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDL 480
L + GL TT E +R FSS+GDL
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDL 101
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGR-RHMIDGRWCDVRI-PNGKDGSSTAHSKGIRRPLY 680
TG SKG+GF+ F + L AL IDGR ++ +G G+ + + R +Y
Sbjct: 112 TGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIY 170
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDL 480
L + GL TT E +R FSS+GDL
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDL 101
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGR-RHMIDGRWCDVRI-PNGKDGSSTAHSKGIRRPLY 680
TG SKG+GF+ F + L AL IDGR ++ +G G+ + + R +Y
Sbjct: 112 TGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIY 170
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGR 581
TG+S+GFGF+ F E RA+ +
Sbjct: 250 TGVSRGFGFVNFVSREDAQRAINK 273
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 617
TG SKG+GF++F + + RA+ ++G +C R
Sbjct: 251 TGRSKGYGFVRFGDENERSRAMTE---MNGAFCSSR 283
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +3
Query: 504 YATGLSKGFGFIKFAEYEAQLRALGRRH--MIDGRWCDVRIPNGKDGSSTAHSKGIRRPL 677
Y TG +GFGF+K+ E A+ R + +I GR ++ I ++ T
Sbjct: 82 YYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGR--EIAIVFAEENRKTPQEMRTTNGT 139
Query: 678 YGEY--YSRRSQRS 713
G + Y R S RS
Sbjct: 140 SGRHGDYKRTSHRS 153
>At3g59640.1 68416.m06654 glycine-rich protein
Length = 246
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 582 RHMIDGRWCDVRIPNGKDGSSTAHSKGIRRPLYGEYYSRRSQRSTSAP 725
R++I GR VR+ +G S K R+ +Y EY+ + + STS P
Sbjct: 189 RYLI-GRPKSVRLTRVMEGWSRFFEKMSRKKVYNEYWLKIKRSSTSLP 235
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 400 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDYPK 525
+ L V L TT++++R FS FG + ++ RD+ PK
Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPK 48
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 400 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
S L V GL W T + +++ F+SFG++ V D
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIAD 69
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 400 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
S L V GL W T + +++ F+SFG++ V D
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIAD 69
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 385 PRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
P PR +++ V LP + E+ +R F FG + V RD
Sbjct: 224 PTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD 263
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 513 GLSKGFGFIKFAEYEAQLRAL 575
G+S+GFGF+ ++ E LRAL
Sbjct: 369 GMSRGFGFVAYSNPEEALRAL 389
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 418 GLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
GL W T +E ++ FS FGD++ ++ D
Sbjct: 12 GLAWATNDEDLQRTFSQFGDVIDSKIIND 40
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 418 GLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
GL W T +E ++ FS FGD++ ++ D
Sbjct: 12 GLAWATNDEDLQRTFSQFGDVIDSKIIND 40
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 418 GLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
GL W T +E ++ FS FGD++ ++ D
Sbjct: 12 GLAWATNDEDLQRTFSQFGDVIDSKIIND 40
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 418 GLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
GL W T +E ++ FS FGD++ ++ D
Sbjct: 12 GLAWATNDEDLQRTFSQFGDVIDSKIIND 40
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
L V +P TEE +R YF G++L V + +D
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
L V +P TEE +R YF G++L V + +D
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
>At3g49060.1 68416.m05360 protein kinase family protein / U-box
domain-containing protein contains Pfam profile: PF00069
Eukaryotic protein kinase domain
Length = 805
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 635 RLVDGSFERYSSAVVRRILQPKISE 709
+LV GSF+++ V+ R+ +PK+ E
Sbjct: 62 KLVGGSFKKHDVKVIERVEKPKVDE 86
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 510 TGLSKGFGFIKFAEYEAQLRALGRRHMIDGR 602
TG S+GFGF+ F EA A+ +DGR
Sbjct: 77 TGRSRGFGFVTFTSSEAASSAI---QALDGR 104
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 391 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRD 504
P S++ + GLP EE +RD G++ V++ +D
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKD 150
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 287 AAYASSTSACHHRRRAGRPTDIGVPSHARNRRRLDHDA 400
A+ +S S H+R RP VP ARN R+ H +
Sbjct: 488 ASSSSVQSRSHNRVSQPRPLASAVPQAARNANRIPHSS 525
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 406 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTPPDY 519
+IV GLP + + ++D+ GD+ +V RD+ Y
Sbjct: 124 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTY 161
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 370 AESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFG 474
AES P+ + S + V LP T E + + F SFG
Sbjct: 265 AESIKPQAQGSSIFVANLPMDATIEQLYETFKSFG 299
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 104 EEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDGS 214
+E +G+ +SVS+ E EG +DEP++ + GS
Sbjct: 4540 DEFDGKEYSVSEDEEEDKEDEGSEDEPLDNGIGDVGS 4576
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,051,256
Number of Sequences: 28952
Number of extensions: 311523
Number of successful extensions: 1290
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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