Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30288
         (704 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    26   0.34 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    25   0.79 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.79 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.79 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.4  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   7.4  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.4  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.4  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   9.8  

>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 125

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 572 ILTLIPSTPCLRSTCLVAVLTYHCKGLQSGS*VHL 468
           +L L PS P +  +    ++TY    L++GS VHL
Sbjct: 54  VLRLYPSVPFIARSLGEDIVTYSGHKLKAGSMVHL 88


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 259 CRIVC*KGGYSWPLRYRPGRISKIQA 336
           CR+VC K G  WP   +P  ++KI +
Sbjct: 61  CRLVCGKYGALWP---QPTSVTKISS 83


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 390 WNLVPVVVKLLYLASC 437
           WNL+P+ V +L  A+C
Sbjct: 922 WNLLPIAVFILVCATC 937


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 390 WNLVPVVVKLLYLASC 437
           WNL+P+ V +L  A+C
Sbjct: 922 WNLLPIAVFILVCATC 937


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 388 DETENTIASTTYSETSDKLVS*RFGLG 308
           DET+N  +  TY+E  +KL      LG
Sbjct: 340 DETKNHYSKNTYNEQGNKLADLYKSLG 366


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 388 DETENTIASTTYSETSDKLVS*RFGLG 308
           DET+N  +  TY+E  +KL      LG
Sbjct: 232 DETKNHYSKNTYNEQGNKLADLYKSLG 258


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 15   VNNISKKRKFVGDGVFKAELNEF 83
            VNN S +R+F+   V   E N F
Sbjct: 1915 VNNPSARRRFIAHVVDFIETNNF 1937


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 15  VNNISKKRKFVGDGVFKAELNEFL 86
           +N++ K+R+ V + +FK E++E L
Sbjct: 75  LNDLEKRRE-VYESIFKVEVHEAL 97


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 15  VNNISKKRKFVGDGVFKAELNEFL 86
           +N++ K+R+ V + +FK E++E L
Sbjct: 235 LNDLEKRRE-VYESIFKVEVHEAL 257


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 15  VNNISKKRKFVGDGVFKAELNEFL 86
           +N++ K+R+ V + +FK E++E L
Sbjct: 235 LNDLEKRRE-VYESIFKVEVHEAL 257


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 422 QQLHNH--GHQIP**NGEHHSKHDVQRDL 342
           Q ++NH  GH +   + +HH  H  Q+ +
Sbjct: 160 QSMNNHHMGHHMQEQHPQHHQPHHQQQHM 188


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 422 QQLHNH--GHQIP**NGEHHSKHDVQRDL 342
           Q ++NH  GH +   + +HH  H  Q+ +
Sbjct: 162 QSMNNHHMGHHMQEQHPQHHQPHHQQQHM 190


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 601 NGPKKATTRPHPGN 642
           N P K++T P+P N
Sbjct: 63  NTPNKSSTSPYPPN 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,804
Number of Sequences: 336
Number of extensions: 4180
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)