Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30288
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 148 4e-36
08_02_0816 - 21499417-21499627,21502965-21503317,21505461-215056... 31 0.89
09_04_0138 - 15021764-15021953,15023112-15023464,15023878-150240... 29 2.7
08_01_1063 + 10839860-10840099,10840185-10840895 29 3.6
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 3.6
03_05_0190 - 21770610-21770641,21770741-21770811,21771058-217711... 29 3.6
12_01_0633 - 5241098-5241283,5241361-5241453,5241555-5241615,524... 29 4.8
11_02_0133 + 8661030-8661141,8661727-8662031,8662158-8662331,866... 29 4.8
11_01_0639 - 5128139-5128159,5128237-5128329,5128431-5128491,512... 29 4.8
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 4.8
09_02_0126 + 4582214-4582453,4582539-4584201,4584244-4584584,458... 29 4.8
09_01_0027 - 469856-470773,470780-471261,471296-471408,471453-47... 29 4.8
05_03_0470 + 14448243-14448482,14448568-14449181,14449508-144501... 29 4.8
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 29 4.8
04_03_0171 + 12223269-12223508,12223594-12224262,12224399-12224899 29 4.8
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 29 4.8
01_05_0384 - 21668869-21669121,21669802-21669889,21670036-21670168 28 6.3
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 28 8.3
08_01_0346 - 3063440-3064189 28 8.3
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582... 28 8.3
01_05_0137 + 18492866-18493105,18493191-18493481,18494006-184942... 28 8.3
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 148 bits (359), Expect = 4e-36
Identities = 79/133 (59%), Positives = 88/133 (66%)
Frame = +2
Query: 260 VELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLR 439
VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR
Sbjct: 86 VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLR 145
Query: 440 GQRAKSMKFVDGLMIHSGDPCNDTSTLLPDMCFSDKEY*ESRSKSCCRGTSKARTARRKP 619
QRAKSMKF DG MI SG P N + + K K + P
Sbjct: 146 AQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPMTP 205
Query: 620 QPDHILVTEPKDE 658
PD + + PKDE
Sbjct: 206 LPDLVTIHAPKDE 218
Score = 142 bits (344), Expect = 2e-34
Identities = 70/78 (89%), Positives = 73/78 (93%)
Frame = +3
Query: 24 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 203
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 204 RIRELTSVVQKRFNIPEN 257
RIRELTSVVQKRFN PEN
Sbjct: 67 RIRELTSVVQKRFNFPEN 84
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/38 (71%), Positives = 32/38 (84%)
Frame = +1
Query: 496 PLQ*YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGP 609
P+ Y+++A RHVLLRQGVLGIKVKIML WD +GK GP
Sbjct: 165 PVNLYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGP 202
>08_02_0816 -
21499417-21499627,21502965-21503317,21505461-21505649,
21505819-21505973,21506026-21506245
Length = 375
Score = 31.1 bits (67), Expect = 0.89
Identities = 16/74 (21%), Positives = 31/74 (41%)
Frame = +2
Query: 386 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDTSTLLPDMCFSDKEY*ESR 565
++E RG E V++ + + F + + DP ++ + C+SD +Y +
Sbjct: 128 MVEPAVRGTEYVINAAAEAGTVRRVVFTSSIGAVTMDPNRGPDVVVDESCWSDLDYCKET 187
Query: 566 SKSCCRGTSKARTA 607
C G + A A
Sbjct: 188 RNWYCYGKAVAEQA 201
>09_04_0138 -
15021764-15021953,15023112-15023464,15023878-15024066,
15024171-15024299,15024469-15024642
Length = 344
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/71 (21%), Positives = 29/71 (40%)
Frame = +2
Query: 386 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDTSTLLPDMCFSDKEY*ESR 565
++E RG E V+ + + F + + DP ++ + C+SD E+ +
Sbjct: 104 MVEPAVRGTEYVIKAAAEAGTVRRVVFTSSIGAVTMDPNRGPDVVVDESCWSDLEFCKKT 163
Query: 566 SKSCCRGTSKA 598
C G + A
Sbjct: 164 KNWYCYGKAVA 174
>08_01_1063 + 10839860-10840099,10840185-10840895
Length = 316
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 599 RTARRKPQPDHIL-VTEPKDEPVAPRTRPAK 688
R+ RK + H++ + PK EP+AP+T AK
Sbjct: 125 RSVNRKDEGFHVVTLVSPKGEPLAPKTARAK 155
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -1
Query: 464 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 360
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>03_05_0190 -
21770610-21770641,21770741-21770811,21771058-21771168,
21771249-21771500,21771584-21772086,21772188-21773234,
21773361-21773768,21773814-21773956,21774020-21774053
Length = 866
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 593 KARTARRKPQPDHILV-TEPKDEPVAPRTRPAK 688
+ R+ RK + H++ PK EP+AP+T AK
Sbjct: 115 RERSVNRKDEGFHVVTHVSPKGEPLAPKTARAK 147
>12_01_0633 -
5241098-5241283,5241361-5241453,5241555-5241615,
5241703-5241813,5241960-5242145,5242229-5242590,
5242730-5243152,5243159-5244382,5244468-5244707
Length = 961
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 599 RTARRKPQPDHILV-TEPKDEPVAPRTRPAK 688
R+ RK + H++ PK EP+AP+T AK
Sbjct: 125 RSVNRKDEGFHVVTHVSPKGEPLAPKTARAK 155
>11_02_0133 +
8661030-8661141,8661727-8662031,8662158-8662331,
8662469-8662783,8662886-8663456,8663474-8663786,
8663870-8663968,8664202-8664315,8664403-8664463,
8664565-8664657,8664742-8664927
Length = 780
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 599 RTARRKPQPDHILV-TEPKDEPVAPRTRPAK 688
R+ RK + H++ PK EP+AP+T AK
Sbjct: 61 RSVNRKDEGFHVVTHVSPKGEPLAPKTARAK 91
>11_01_0639 -
5128139-5128159,5128237-5128329,5128431-5128491,
5128579-5128689,5128770-5129021,5129105-5129440,
5129486-5131140,5131316-5131555
Length = 922
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 599 RTARRKPQPDHILV-TEPKDEPVAPRTRPAK 688
R+ RK + H++ PK EP+AP+T AK
Sbjct: 95 RSVNRKDEGFHVVTHVSPKGEPLAPKTARAK 125
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 85 SLGSWPRTAT-PAWKCGSLPSARRSLLWPPGHRVCS 189
++ SWPR P W C S RR L P R C+
Sbjct: 10 AVSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCA 45
>09_02_0126 +
4582214-4582453,4582539-4584201,4584244-4584584,
4584809-4584999,4585080-4585190,4585278-4585338,
4585610-4585795
Length = 930
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 599 RTARRKPQPDHILV-TEPKDEPVAPRTRPAK 688
R+ RK + H++ PK EP+AP+T AK
Sbjct: 125 RSVNRKDEGFHVVTHVSPKGEPLAPKTARAK 155
>09_01_0027 -
469856-470773,470780-471261,471296-471408,471453-472003,
472089-472328
Length = 767
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 599 RTARRKPQPDHILV-TEPKDEPVAPRTRPAK 688
R+ RK + H++ PK EP+AP+T AK
Sbjct: 125 RSVNRKDEGFHVVTHVSPKGEPLAPKTARAK 155
>05_03_0470 +
14448243-14448482,14448568-14449181,14449508-14450135,
14450217-14450827,14450911-14451162,14451243-14451353,
14451441-14451501,14451603-14451695,14451773-14451940
Length = 925
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 599 RTARRKPQPDHILV-TEPKDEPVAPRTRPAK 688
R+ RK + H++ PK EP+AP+T AK
Sbjct: 125 RSVNRKDEGFHVVTHVSPKGEPLAPKTARAK 155
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 616 ATTRPHPGNRAQGRARGPSNPTSEMRSPS 702
+T RP PG R++GR+R P +E SPS
Sbjct: 200 STHRPPPGGRSRGRSRHPRK--AESTSPS 226
>04_03_0171 + 12223269-12223508,12223594-12224262,12224399-12224899
Length = 469
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 599 RTARRKPQPDHILV-TEPKDEPVAPRTRPAK 688
R+ RK + H++ PK EP+AP+T AK
Sbjct: 125 RSVNRKDEGFHVVTHVSPKGEPLAPKTARAK 155
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -1
Query: 149 RADGSDPHFHAGVAVLGQLPSEELIEFCLENPIS 48
R DG +PH A + G ++ CL P S
Sbjct: 768 RQDGGEPHLQAAAVLAGSRGGDDAAHACLRRPSS 801
>01_05_0384 - 21668869-21669121,21669802-21669889,21670036-21670168
Length = 157
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 569 KSCCRGTSKARTARRKPQPDHILVTEPKDEPVAPR 673
+S R + AR +R P H L + P+ +PVA R
Sbjct: 91 RSFARHSGFARKSRLPKTPQHSLTSPPQQDPVAKR 125
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 509 YHCKGLQSGS*VHLQTSLIWHVDHAACQIQQLHNHGH 399
Y + +QSG+ LIWH+ + C+I+ H H
Sbjct: 748 YWSEIIQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 314 AESLRYKLIGGLAVRRACYGVLR 382
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>04_04_1475 +
33856351-33856582,33857614-33857781,33858156-33858261,
33858391-33858442,33858525-33858642,33858736-33858766,
33858962-33858985,33859075-33859199,33860087-33860168,
33860319-33860441,33860539-33860592,33860669-33860738,
33861276-33861309,33861824-33862170
Length = 521
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 604 GPKKATTRPHPGNRAQGRARGPSNPTSEMRS 696
G KKAT P P R +GR + +P + S
Sbjct: 476 GAKKATPEPKPSARGRGRPKKTESPAQKTGS 506
>01_05_0137 +
18492866-18493105,18493191-18493481,18494006-18494208,
18494308-18494512,18494525-18494743,18494748-18495085,
18495408-18495669,18496339-18496524
Length = 647
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 599 RTARRKPQPDHILV-TEPKDEPVAPRTRPAK 688
R+ RK + H++ PK EP+AP+T AK
Sbjct: 125 RSVNRKDEGFHVVSHVSPKGEPLAPKTARAK 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,718,557
Number of Sequences: 37544
Number of extensions: 495521
Number of successful extensions: 1728
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1728
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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