Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30288
(704 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28) 174 7e-44
SB_57323| Best HMM Match : ShTK (HMM E-Value=0) 31 0.69
SB_5097| Best HMM Match : GARS_A (HMM E-Value=0) 31 0.91
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68) 29 3.7
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31) 29 3.7
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_51223| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 28 8.5
>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
Length = 240
Score = 174 bits (423), Expect = 7e-44
Identities = 88/136 (64%), Positives = 99/136 (72%)
Frame = +2
Query: 257 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKL 436
SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLRFIMESGA+GCEVVVSGKL
Sbjct: 83 SVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLRFIMESGAKGCEVVVSGKL 142
Query: 437 RGQRAKSMKFVDGLMIHSGDPCNDTSTLLPDMCFSDKEY*ESRSKSCCRGTSKARTARRK 616
RGQRAKSMKFVDGLM+H+G+P + + + K +T +K
Sbjct: 143 RGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQGVLGIKVKIMLPWDPTGKTGPKK 202
Query: 617 PQPDHILVTEPKDEPV 664
P PD + + EPKDE V
Sbjct: 203 PLPDQVSIVEPKDEVV 218
Score = 144 bits (349), Expect = 6e-35
Identities = 70/77 (90%), Positives = 74/77 (96%)
Frame = +3
Query: 24 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 203
ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64
Query: 204 RIRELTSVVQKRFNIPE 254
RIRELTSVVQKRF PE
Sbjct: 65 RIRELTSVVQKRFGFPE 81
>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
Length = 911
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +2
Query: 563 RSKSCCRGTSKARTARRKPQPDHILVTEPKDEPVAPRTRPAKCAP 697
R+ C GT+KA + QP VT+P D PV P P AP
Sbjct: 764 RTCDYCGGTTKAPDTQPPTQPP---VTQPPDTPVPPTQPPVTDAP 805
>SB_5097| Best HMM Match : GARS_A (HMM E-Value=0)
Length = 893
Score = 31.1 bits (67), Expect = 0.91
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 398 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDTSTLL 523
G G +V+ KL G+ + F DG I + P D TLL
Sbjct: 183 GDAGSTIVIEEKLEGEEFSVLAFTDGKTIAAMPPAQDHKTLL 224
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 61 SRQNSMSSSLGSWPRTATPAWKCGSLPSARRSLLWPPGH-RVCSERKDAESVSSLP*Y 231
+R+ ++ +L + P T +CG + +AR L+ P H R + V SLP Y
Sbjct: 272 TRKMMLTRALSTTPSTTPELRRCGGVLTAREGLIMSPNHPRPYPSDTHCKWVISLPSY 329
>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
Length = 401
Score = 29.1 bits (62), Expect = 3.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 427 WQAAWSTCQINEVCRWTHDPLW 492
W+ AW+ C + E +T++P W
Sbjct: 76 WKQAWTPCSLQETTIYTNNPPW 97
>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
Length = 976
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 421 CIWQAAWSTCQINEVCRWTHDPLWRP 498
C W + W + E WTH P RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210
>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 286 YSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWCPW 408
Y+W L + P + ++ Y R + L C+P + W W
Sbjct: 4 YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44
>SB_51223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
Frame = +1
Query: 601 NGPKKATTRPH--------PGNRAQGRA--RGPSNPTSEMRSPS 702
NGP+KA T PH GNR A GPS+P ++ PS
Sbjct: 21 NGPEKAETLPHTFFSTGGGAGNRPSPPADRHGPSDPPTDRHGPS 64
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 607 PKKATTRPHPGNRAQGRARGPSNPTSEMR 693
P+ TRPHPG GRA G S R
Sbjct: 1506 PEPPATRPHPGRVEAGRALGKVETDSPER 1534
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,539,359
Number of Sequences: 59808
Number of extensions: 555640
Number of successful extensions: 2034
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2026
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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