Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30288
(704 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C) 152 3e-37
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A) 150 8e-37
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso... 149 2e-36
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila... 33 0.18
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 33 0.18
At5g66850.1 68418.m08428 protein kinase family protein contains ... 30 1.3
At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1... 29 2.3
At1g77970.1 68414.m09086 hydroxyproline-rich glycoprotein family... 29 2.3
At1g70150.1 68414.m08072 zinc finger (MYND type) family protein ... 29 3.0
At1g64070.1 68414.m07258 disease resistance protein (TIR-NBS-LRR... 29 3.0
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai... 29 4.0
At4g36190.1 68417.m05149 serine carboxypeptidase S28 family prot... 29 4.0
At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE) i... 29 4.0
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 29 4.0
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 29 4.0
At1g72110.1 68414.m08335 expressed protein 28 5.2
At2g25150.1 68415.m03008 transferase family protein similar to 1... 28 6.9
At1g27430.1 68414.m03343 GYF domain-containing protein contains ... 28 6.9
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU... 28 6.9
At5g03100.1 68418.m00258 F-box family protein contains F-box dom... 27 9.2
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ... 27 9.2
>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
Length = 248
Score = 152 bits (368), Expect = 3e-37
Identities = 77/138 (55%), Positives = 93/138 (67%)
Frame = +2
Query: 251 RESVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 430
++SVELYAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSG
Sbjct: 81 QDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 140
Query: 431 KLRGQRAKSMKFVDGLMIHSGDPCNDTSTLLPDMCFSDKEY*ESRSKSCCRGTSKARTAR 610
KLR RAKSMKF DG M+ SG P + + + K K +
Sbjct: 141 KLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGP 200
Query: 611 RKPQPDHILVTEPKDEPV 664
P PD +++ PK++ V
Sbjct: 201 MTPLPDVVIIHTPKEDDV 218
Score = 135 bits (327), Expect = 2e-32
Identities = 66/78 (84%), Positives = 72/78 (92%)
Frame = +3
Query: 24 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 203
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 204 RIRELTSVVQKRFNIPEN 257
RIRELTS+VQKRF P++
Sbjct: 65 RIRELTSLVQKRFKFPQD 82
>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
Length = 250
Score = 150 bits (364), Expect = 8e-37
Identities = 79/147 (53%), Positives = 97/147 (65%)
Frame = +2
Query: 254 ESVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGK 433
+SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGK
Sbjct: 82 DSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGK 141
Query: 434 LRGQRAKSMKFVDGLMIHSGDPCNDTSTLLPDMCFSDKEY*ESRSKSCCRGTSKARTARR 613
LR RAKSMKF DG M+ SG P + + + K ++ +
Sbjct: 142 LRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPK 201
Query: 614 KPQPDHILVTEPKDEPVAPRTRPAKCA 694
P PD +++ PKD+ V + PA+ A
Sbjct: 202 TPLPDVVIIHAPKDDVV--YSAPAQAA 226
Score = 134 bits (324), Expect = 5e-32
Identities = 66/76 (86%), Positives = 70/76 (92%)
Frame = +3
Query: 24 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 203
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 204 RIRELTSVVQKRFNIP 251
RIRELTS+VQKRF P
Sbjct: 65 RIRELTSLVQKRFKFP 80
>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
protein S3a - Xenopus laevis, PIR:R3XL3A
Length = 249
Score = 149 bits (361), Expect = 2e-36
Identities = 76/135 (56%), Positives = 91/135 (67%)
Frame = +2
Query: 254 ESVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGK 433
+SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGK
Sbjct: 82 DSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGK 141
Query: 434 LRGQRAKSMKFVDGLMIHSGDPCNDTSTLLPDMCFSDKEY*ESRSKSCCRGTSKARTARR 613
LR RAKSMKF DG M+ SG P + + + K K + +
Sbjct: 142 LRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPK 201
Query: 614 KPQPDHILVTEPKDE 658
P PD +++ PK+E
Sbjct: 202 TPLPDVVIIHSPKEE 216
Score = 134 bits (324), Expect = 5e-32
Identities = 66/76 (86%), Positives = 70/76 (92%)
Frame = +3
Query: 24 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 203
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 204 RIRELTSVVQKRFNIP 251
RIRELTS+VQKRF P
Sbjct: 65 RIRELTSLVQKRFKFP 80
>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 295
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 221 SELTDSASFLSEHTLCPGGHNNDLRADGSD 132
SEL + + LSEH+L GH +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284
>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 406
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 221 SELTDSASFLSEHTLCPGGHNNDLRADGSD 132
SEL + + LSEH+L GH +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395
>At5g66850.1 68418.m08428 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain; identical
to cDNA MAP3K gamma protein kinase GI:2315152
Length = 716
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -3
Query: 537 KHMSGSSVDVSLQGSPEWIMSP 472
KH++G D+SL+GSP W M+P
Sbjct: 495 KHLTGQRADLSLKGSPYW-MAP 515
>At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1
family protein similar to 13S condensin XCAP-D2 subunit
[Xenopus laevis] GI:3764087; contains Pfam profile
PF04594: Non-SMC condensin subunit, XCAP-D2/Cnd1
Length = 1439
Score = 29.5 bits (63), Expect = 2.3
Identities = 25/84 (29%), Positives = 37/84 (44%)
Frame = +2
Query: 440 GQRAKSMKFVDGLMIHSGDPCNDTSTLLPDMCFSDKEY*ESRSKSCCRGTSKARTARRKP 619
G+ + VD M SGD +T + SD E E S C GT+ R +K
Sbjct: 1276 GEGVSDSEIVDPSMEESGDNLVETESEEEP---SDSEE-EPDSAQC--GTAIPRYLNQKT 1329
Query: 620 QPDHILVTEPKDEPVAPRTRPAKC 691
D+++ TEP++E A+C
Sbjct: 1330 SGDNLIETEPEEEQSDSEPDSAQC 1353
>At1g77970.1 68414.m09086 hydroxyproline-rich glycoprotein family
protein
Length = 76
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = +2
Query: 488 SGDPCNDTSTLLPDMCFSDKEY*ESRSKSCCRGTSKARTARRKPQPDHILVTEPKDEPVA 667
SGD +D S LL +CF + S+ TSK ++ P P + EP P+
Sbjct: 2 SGDMFDDQSPLLSPLCFLESPEPSPESEPEPAPTSKPKST-STPTP----IPEPAPTPI- 55
Query: 668 PRTRPAKC 691
P PA C
Sbjct: 56 PEPAPAPC 63
>At1g70150.1 68414.m08072 zinc finger (MYND type) family protein
contains Pfam profile PF01753: MYND finger
Length = 387
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -1
Query: 680 VGFEGPRARPWALLPGCGLVVAFFGPFLPCWSHGNMILTLIPSTPCLRSTC 528
+G G A AL PG + V GP +P G MI +L +PC+ C
Sbjct: 198 LGQLGVFAELQALFPGLRIYVDLIGPDVPQHMDGEMI-SLCRYSPCMGKEC 247
>At1g64070.1 68414.m07258 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 997
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 230 TEAIQHSRESVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 376
T+AI+ SR S+ L ++ A+ G C E L+ K G V YGV
Sbjct: 61 TQAIRESRISIVLLSKNYASSGWCLDELLEILKCKDDMGQIVMTVFYGV 109
>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 442
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 221 SELTDSASFLSEHTLCPGGHNNDLRADGSD 132
+EL + LSEH++ GH ++ ADG D
Sbjct: 402 TELLQYVARLSEHSVIVSGHRKEIFADGCD 431
>At4g36190.1 68417.m05149 serine carboxypeptidase S28 family protein
contains Pfam PF05577: Serine carboxypeptidase S28
Length = 493
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 25 FQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPSA 147
F RS N+ F S S +L +W R P CGSL S+
Sbjct: 161 FNRSSNVENPWFFFGVSYSGALSAWFRLKFPHLTCGSLASS 201
>At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE)
identical to C2H2 zinc-finger protein SERRATE
GI:14486602 from [Arabidopsis thaliana]
Length = 720
Score = 28.7 bits (61), Expect = 4.0
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -1
Query: 299 KGHE*PPFQHTILQILWNVESLLYYGSELTDSASFLSEHTLCPGGHNNDLRADGSDPHF- 123
KG E T++ LW V L YYG T+ A L H G +D + D ++ F
Sbjct: 395 KGLEGVELLDTLVTYLWRVHGLDYYGKVETNEAKGL-RHVRAE-GKVSDAKGDENESKFD 452
Query: 122 -HAGVAVLGQLPSE 84
H + GQ P E
Sbjct: 453 SHWQERLKGQDPLE 466
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 580 PWDQQGKNGPKKATTRPHPGNRAQGRARGPSNPTSEMRSP 699
P + + P K+T+R PG R++ R+ P S RSP
Sbjct: 236 PKAKSSRRSPAKSTSRS-PGPRSKSRSPSPRRSRSRSRSP 274
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 580 PWDQQGKNGPKKATTRPHPGNRAQGRARGPSNPTSEMRSP 699
P + + P K+T+R PG R++ R+ P S RSP
Sbjct: 236 PKAKSSRRSPAKSTSRS-PGPRSKSRSPSPRRSRSRSRSP 274
>At1g72110.1 68414.m08335 expressed protein
Length = 479
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 703 AKGSAFRWSGSRGHGLV-LGLCYQDVVWLWLSSGRSCLAG 587
AKGS RW S G+ L+ LG+ QD V+ ++ ++ + G
Sbjct: 315 AKGSKCRWGNSIGYVLIPLGMKPQDDVFEYVRQAKTIMDG 354
>At2g25150.1 68415.m03008 transferase family protein similar to
10-deacetylbaccatin III-10-O-acetyl transferase
[gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
III-2-O-benzoyl transferase [gi:11559716] from Taxus
cuspidata; contains Pfam transferase family domain
PF00248; contains EST gb:R65039
Length = 461
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 152 LRADGSDPHFHAGVAVLGQLPSEELIEF 69
L+ SDP GV V+ +LP + ++EF
Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEF 445
>At1g27430.1 68414.m03343 GYF domain-containing protein contains
Pfam profile: PF02213 GYF domain
Length = 1531
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -3
Query: 570 FDL--DS*YSLSEKHMSGSSVDVSLQGSPEWIMSPSTNFIDLAR*PRSLPDTTTSQPRAP 397
FDL D +S S + + D S+ SP+W+ + S+ + R P +P S P
Sbjct: 6 FDLPDDLIFSKSSDQLKELASDNSIPLSPQWLYTKSSEYKMDVRSPTPVPMGNPSDPNPK 65
Query: 396 DS 391
D+
Sbjct: 66 DA 67
>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
Identical to phosphoribosylamine--glycine ligase,
chloroplast [precursor] SP:P52420 from [Arabidopsis
thaliana]
Length = 532
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 398 GARGCEVVVSGKLRGQRAKSMKFVDG 475
G+ GC+VVV L G+ A VDG
Sbjct: 273 GSAGCQVVVEEFLEGEEASFFALVDG 298
>At5g03100.1 68418.m00258 F-box family protein contains F-box domain
Pfam:PF00646
Length = 307
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = -3
Query: 645 SVTRMWSGCGFLRAVLALLVPRQHDFDLDS*YSLSEKHMSGSSVDVSLQGSPEWIMSPST 466
S+ ++ +GC L ++ L R +D DL SL + G + +PE I++P
Sbjct: 163 SIAKILTGCSLLESLTLNLCDRLNDLDLSKSLSLRRLEILGD------RWTPERIVAPHI 216
Query: 465 NFIDL 451
++ L
Sbjct: 217 RYLRL 221
>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 781
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 30 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 206
K RK G + KA + E+ ++ GYSG P+ + ++ +S+ G+K ++
Sbjct: 349 KTRKLTGIRLQKASM-EYGKKKTTRSGYSGHGKSTNPLAMDDLMFVKDPRSLSGKKNKK 406
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,015,034
Number of Sequences: 28952
Number of extensions: 378774
Number of successful extensions: 1268
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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