Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30287
         (716 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.81 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.5  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   3.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.3  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    22   4.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.6  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = -2

Query: 517 ADGP--SGWSREYSPFTTSPSRVSCWDL 440
           A GP  S WS   +P T     ++CW L
Sbjct: 299 APGPTYSTWSTVQTPTTVMSPTINCWSL 326


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -2

Query: 331 CTTGACCTGLKCWTTGEACIYEECSTG 251
           CT     +G+ C T  E C    C  G
Sbjct: 9   CTCPLGFSGINCQTNDEDCTETSCMNG 35


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 367 IMSKIMLPRSMSSHIPSRIPTPAITSPNTKP 459
           ++S   LP + S+   + + T   T P+TKP
Sbjct: 155 VISSTPLPPTTSTTTRTTLTTKFTTKPSTKP 185


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 147 SSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPVEHSSYIHASP 287
           +++ G   PS+ SC     S +  + +  S  SR  V+H    + +P
Sbjct: 125 AAAPGPSDPSVSSCHQGFSSSTWCNYSAYSSASRHHVDHQPVPYLTP 171


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -3

Query: 435 RRCGDPRRNMRTHTSREHDLRHDRS 361
           R+C D R     H   EHD R   S
Sbjct: 249 RQCDDHRDRPPRHFHEEHDTRRASS 273


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 340 RFQLPSNTPIMSKIMLPRSMSSHIPSRIPTPA 435
           R  LP+N       +LP +  ++ P   P P+
Sbjct: 47  RLSLPTNPAFFHPGLLPLAWQANSPPSPPAPS 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,988
Number of Sequences: 336
Number of extensions: 3786
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)