Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30287
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    33   0.054
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.66 
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   2.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.7  
SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce...    27   2.7  
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    27   2.7  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   3.5  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    27   3.5  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   3.5  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    27   3.5  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   4.7  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    26   6.2  
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe...    25   8.2  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   8.2  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 32.7 bits (71), Expect = 0.054
 Identities = 16/65 (24%), Positives = 26/65 (40%)
 Frame = +3

Query: 207 RSPFDSTCRSYCSRRPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHA 386
           ++  D  C+ +CS    +    +  +       P +H    HH   P  V H+    DH 
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVPHNGTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHK 221

Query: 387 PAKYE 401
           P K+E
Sbjct: 222 PWKHE 226



 Score = 32.3 bits (70), Expect = 0.071
 Identities = 18/68 (26%), Positives = 27/68 (39%)
 Frame = +3

Query: 306 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKGE 485
           P +H    HH   P  V H+    DH P K+E   S  + H+   +   +    D ++  
Sbjct: 390 PWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAKGALEDYIQTF 449

Query: 486 YSLLQPDG 509
               Q DG
Sbjct: 450 VETFQIDG 457



 Score = 28.7 bits (61), Expect = 0.88
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
 Frame = +3

Query: 306 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE-------FSYSVEDPHTG---DHKS-QH 452
           P +H    HH   P  V H+    DH P K+E         +S   PH G   DHK  +H
Sbjct: 307 PWKHEEHCHHGRFPRPVPHNGTKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPDHKPWKH 366

Query: 453 E 455
           E
Sbjct: 367 E 367



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 306 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 401
           P +H    HH   P  + H+    DH P K+E
Sbjct: 280 PWKHEEHCHHGKFPRPIPHNGTKPDHKPWKHE 311



 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 249 RPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 401
           RPV H+      P  + +   +H    HH   P  V H+    DH P K+E
Sbjct: 209 RPVPHNG---TKPDHKPWKHEEHCSC-HHDKFPRPVPHNGTKPDHKPWKHE 255



 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 249 RPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 401
           RPV H+      P  + +   +H    HH   P  V H+    DH P K+E
Sbjct: 238 RPVPHNG---TKPDHKPWKHEEHCSC-HHDKFPRPVPHNGTKPDHKPWKHE 284


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +3

Query: 141 AFSSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPVEHSS 269
           + SSS  +  PS+ S  SST S +   ST  SY S   V  SS
Sbjct: 177 SLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSS 219


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 142 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
           P  Q T+  +P  SHAAP+   + P   H+ P + A P
Sbjct: 63  PRKQTTS--SPSFSHAAPLHPLSPPSFTHSQPQIQAQP 98


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 329 HDWSMLHRAEVLDYWRSMYI 270
           +D+S +   E +DYW+S+YI
Sbjct: 549 NDYSPMLSYEAIDYWKSLYI 568


>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 104

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 192 SSTDSRSPFDSTCRSYCSRRPVEHS 266
           S +DS S  DS+C S CSR   E +
Sbjct: 80  SDSDSDSDSDSSCSSCCSRNAYERA 104


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 304 ALCNMLQSCTTLR-FQLPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*K 480
           +LC+++ S +++  F    +   M+   LP   +    S    P   SPN +P++    +
Sbjct: 33  SLCDIVSSPSSVSSFASSDDFAFMNAYCLPIQQNHQFGS----PVAASPNQQPLVESQNR 88

Query: 481 ANTLYSSLMVHPQG 522
            N  Y+SL++   G
Sbjct: 89  RNVTYASLVIGKLG 102


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 264 SSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 425
           S Y+H   VV+     Q  P+  H   P +   SDH +  A  K  F  SV++P
Sbjct: 414 SRYLHFWLVVEGLKESQDDPLNAHMIAPFSDIVSDHTDFTAIVKSYFE-SVDNP 466


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 292 SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHIPSR 420
           S  S  C  + S      +   NT  +S + LPR++S+ IP++
Sbjct: 181 SGRSIDCQWMDSVALNLSRYYGNTEALSSLPLPRNLSADIPAK 223


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 160 AHYTPVLSHAAPVLTHAAPL 219
           A +TPVL H + +L H +PL
Sbjct: 538 AEHTPVLKHTSSLLDHHSPL 557


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 349 LPSNTPIMSKIML--PRSMSSHIPSRIPTPAITSPN 450
           +PSNT I S   L  P   S++IP+ +PT  + S N
Sbjct: 455 VPSNTTISSSPPLTSPVKTSANIPNLLPTSELDSSN 490


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 147  SSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPVEHSSYIHASPV 290
            SS+   L  S  +  SST S S  +S   S  S+R    +S + ++PV
Sbjct: 987  SSTTSGLTSSSSTIPSSTRSESNSESASTSSASKRSSSSTSLVQSNPV 1034


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 349 LPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPV 462
           +P  T +  +  LP   S+ + S+  TP+ ++  T PV
Sbjct: 185 IPEGTALSQRETLPNMGSAQMKSQSRTPSFSNVTTSPV 222


>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 366 DHVEDHAPAKYEFSYSVEDPHTGDHKSQHETR 461
           D+V++H P   E +   ++    DH + ++TR
Sbjct: 2   DNVQEHDPDTQEHNNETQNHKQEDHSNSYQTR 33


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 130 ERCFGKTQHGRGPRL*H 80
           +RCFGKT  G  P L H
Sbjct: 415 KRCFGKTNDGSNPCLYH 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,238
Number of Sequences: 5004
Number of extensions: 67598
Number of successful extensions: 280
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)