Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30287
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169 30 2.1
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 29 2.8
03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597... 29 2.8
10_08_0738 - 20212220-20212282,20212387-20212593,20212690-202128... 29 3.7
04_04_0512 + 25806599-25808080 29 3.7
04_01_0471 + 6099768-6100094,6100384-6100416 29 3.7
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 29 3.7
04_04_0776 - 28000220-28000337,28000760-28000872,28001194-280012... 29 4.9
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 28 8.5
08_01_0397 - 3509186-3510291,3510322-3512335 28 8.5
08_01_0267 - 2153421-2153759,2153895-2154098,2154358-2154429,215... 28 8.5
03_02_0933 - 12505196-12505286,12505759-12505814,12508780-125088... 28 8.5
02_03_0167 - 15923872-15925683 28 8.5
02_03_0131 - 15576422-15577021 28 8.5
>03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169
Length = 515
Score = 29.9 bits (64), Expect = 2.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 119 WEDTAWPWPSSITPPWQIAK 60
W+D WPSS + PW++ K
Sbjct: 227 WQDVLLLWPSSSSSPWELTK 246
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 361 TPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKP 459
TP M+ + P +M S + + TPA+T+P T P
Sbjct: 315 TPFMNPVTAP-TMPSPVTNPATTPAVTNPTTMP 346
>03_04_0169 -
17959262-17959304,17959441-17959532,17959682-17959759,
17959938-17960075,17960174-17960302,17960556-17960685,
17960797-17960974,17961177-17961315,17961399-17961488,
17961633-17961794,17961966-17962130,17962250-17962387,
17962827-17963006,17963405-17963533,17963878-17964113,
17964233-17964395,17965260-17965628,17965724-17965828
Length = 887
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 312 AQG*SVGLLAKHVYTKNVPRGGVNNRTGMLNQRGCVSQYWSSMTQYWGIMC 160
AQG SV L+ ++V GG+N G+L RG ++ + + + + WG C
Sbjct: 433 AQGKSVILVRTETSPEDV--GGMNAAAGILTARGGMTSHAAVVARGWGKCC 481
>10_08_0738 -
20212220-20212282,20212387-20212593,20212690-20212819,
20212919-20213089,20213311-20213433,20213517-20213618,
20214123-20214880
Length = 517
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 116 EDTAWPWPSSITPPWQIAKIEQTTAIL 36
E WP P S PP ++ K EQT ++
Sbjct: 136 EAARWPPPPSFQPPIEVIKAEQTAPLI 162
>04_04_0512 + 25806599-25808080
Length = 493
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = +3
Query: 342 IPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKG 482
+P V +S+ + +HA ++ P GD +++H++ + + G
Sbjct: 392 LPEYVSNSEELSNHATFNHKVEEDSSSPAAGDRENEHDSSNSATIDG 438
>04_01_0471 + 6099768-6100094,6100384-6100416
Length = 119
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 51 LLDFGYLPRWCYRRGPRPC-CVFPKHR 128
+L+F +LPR RRG R C V P H+
Sbjct: 67 VLNFAFLPRTSLRRGARACRIVVPHHK 93
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = -3
Query: 423 DPRRNMRTHTSREH-DLRHDRSV----RRQLESQRG 331
+PR R TSR+H RHDRSV R Q S RG
Sbjct: 292 EPRSKRRRSTSRDHYQERHDRSVSPSSREQRHSYRG 327
>04_04_0776 -
28000220-28000337,28000760-28000872,28001194-28001289,
28001647-28001763,28002136-28002267,28002348-28002524,
28002660-28002837,28003270-28003373,28003922-28003996
Length = 369
Score = 28.7 bits (61), Expect = 4.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 16 RHLNMFFKIAVVCSILAICQGGVI 87
RH+ + + A VC +A+C+GG +
Sbjct: 22 RHVQILKRSAAVCGAVAVCRGGAV 45
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 298 CWTTGEAC--IYEECSTGRREQ*DRHVESKGLRESVLEQHDSILGYNVPLL 152
C TGE C + +EQ D H LR+ +L+ +DS+ GY + L
Sbjct: 377 CEPTGELCANLCRNLGAHLKEQ-DGHPSFSELRKVLLDNYDSLSGYALSCL 426
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -3
Query: 477 SRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVR-RQLESQRGARLE 319
SRHHH R DR RR+ RE +R R ++ E +R R E
Sbjct: 39 SRHHHREDRDDDRDRDRDRERRHREKERDREERKAREREEREKEKERERARRRE 92
>08_01_0267 -
2153421-2153759,2153895-2154098,2154358-2154429,
2154514-2154599,2154704-2154830,2154899-2155052,
2156129-2156451
Length = 434
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +3
Query: 327 VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKGEYSLLQPD 506
+H A+P V H D + V D G + + TR+G ++G Y L P+
Sbjct: 227 LHDGAVPPVV-HRDIKSPNILLDQSMHARVAD--FGLSREEMVTRNGANIRGTYGYLDPE 283
Query: 507 GPSARSNTQLTTTTGFNAIV 566
S+RS T+ + + ++
Sbjct: 284 YVSSRSFTKKSDVYSYGVLL 303
>03_02_0933 -
12505196-12505286,12505759-12505814,12508780-12508873,
12508949-12509079,12509187-12509290,12509585-12509680,
12510752-12510860,12511252-12511296
Length = 241
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 213 PFDSTCRSYCSRRPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDH 383
P S +YCS S Y H V + V P H + P++ E+ H+ED+
Sbjct: 10 PAGSGKSTYCS------SLYQHCETVGRTIHMVNLDPAAEHFSYPVSTENHRHLEDN 60
>02_03_0167 - 15923872-15925683
Length = 603
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -1
Query: 434 AGVGILDGI*ELILRGSMIFDMIGVFDGNWNRSVVHDWSML 312
AG+ +L+ + +++RGS + +FDG N+SVV W+ L
Sbjct: 187 AGLPVLNSVLTMLVRGSHLDAARLLFDGICNKSVV-TWTAL 226
>02_03_0131 - 15576422-15577021
Length = 199
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -3
Query: 453 RVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGAR 325
R G DR PR R H R+ D DR R E +RG R
Sbjct: 20 RDGERDRELDRPRD--RDHRDRDRDKERDRDRDRDRERRRGER 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,085,487
Number of Sequences: 37544
Number of extensions: 507055
Number of successful extensions: 1900
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1896
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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