Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30287
(716 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 35 0.076
SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043) 34 0.10
SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017) 33 0.18
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031) 33 0.18
SB_8567| Best HMM Match : EB (HMM E-Value=2.3) 33 0.18
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06) 33 0.23
SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_30517| Best HMM Match : HLH (HMM E-Value=6.9e-15) 33 0.31
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33) 32 0.53
SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6) 32 0.53
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_46011| Best HMM Match : DNA_ligase_ZBD (HMM E-Value=2.9) 31 1.2
SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8) 30 1.6
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0) 30 1.6
SB_58551| Best HMM Match : GLTT (HMM E-Value=5.7e-23) 30 1.6
SB_38752| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_34294| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_31111| Best HMM Match : PAPA-1 (HMM E-Value=0.75) 30 2.2
SB_10659| Best HMM Match : PAPA-1 (HMM E-Value=0.75) 30 2.2
SB_2100| Best HMM Match : PAPA-1 (HMM E-Value=0.75) 30 2.2
SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_28441| Best HMM Match : GLTT (HMM E-Value=3.7e-28) 30 2.2
SB_24531| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00083) 30 2.2
SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13) 30 2.2
SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23) 29 2.8
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 29 3.8
SB_29375| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_19076| Best HMM Match : HECT (HMM E-Value=0) 28 6.6
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_38532| Best HMM Match : CRAM_rpt (HMM E-Value=2.1e-29) 28 6.6
SB_43974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_41288| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_35669| Best HMM Match : CCT (HMM E-Value=9.1) 28 8.7
SB_31096| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_58339| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_36300| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_33718| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2) 28 8.7
SB_4465| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Frame = +3
Query: 255 VEHSSYI--HASPVVQHFSP--VQHAP-VVHHAAIPIAVEHSDHVEDHAPAKYEFS-YSV 416
V+HS Y H+S VQH SP VQH+P V H+ P V+HS + H+P + S Y+V
Sbjct: 78 VQHSPYTAQHSSCTVQH-SPYTVQHSPYTVQHS--PCTVQHSPYTVQHSPCTVQHSPYTV 134
Query: 417 E-DPHTGDH 440
+ P+T H
Sbjct: 135 QHSPYTVQH 143
Score = 40.3 bits (90), Expect = 0.002
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Frame = +3
Query: 255 VEHSSYI--HASPVVQHFSP--VQHAP-VVHHAAIPIAVEHSDHVEDHAPAKYEFS-YSV 416
V+HS Y H+S VQH SP VQH+P V H+ P V+HS + H+P + S Y+V
Sbjct: 220 VQHSPYTVQHSSYTVQH-SPYTVQHSPYTVQHS--PYTVQHSSYTVQHSPYTVQHSPYTV 276
Query: 417 E-DPHTGDH 440
+ P+T H
Sbjct: 277 QHSPYTVQH 285
Score = 38.3 bits (85), Expect = 0.006
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Frame = +3
Query: 255 VEHSSYI--HASPVVQHFSP--VQHAP-VVHHAAIPIAVEHSDHVEDHAPAKYEFS-YSV 416
V+HS Y H+ VQH SP VQH+P V H+ P V+HS + H+P + S Y+V
Sbjct: 311 VQHSPYTVQHSPYTVQH-SPYTVQHSPYTVQHS--PYTVQHSQYTVQHSPYTVQHSPYTV 367
Query: 417 E-DPHTGDH 440
+ P+T H
Sbjct: 368 QHSPYTVQH 376
Score = 37.1 bits (82), Expect = 0.014
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Frame = +3
Query: 222 STCRSYCSRRPVEHSS-YIHASPVVQHFSP--VQHAP-VVHHAAIPIAVEHSDHVEDHAP 389
ST S +++S+ +I S +SP VQH+P V H+ P V+HS + H+P
Sbjct: 11 STAHIQYSTAHIQYSTAHIQYSTAHTQYSPYTVQHSPYTVQHS--PYTVQHSSYTVQHSP 68
Query: 390 AKYEFS-YSVE-DPHTGDHKS 446
+ S Y+V+ P+T H S
Sbjct: 69 YTVQHSPYTVQHSPYTAQHSS 89
Score = 36.3 bits (80), Expect = 0.025
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 255 VEHSSYI--HASPVVQHFSP--VQHAP-VVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 419
V+HS Y H+ VQH SP VQH+P V H+ P V+HS + + +F YS
Sbjct: 127 VQHSPYTVQHSPYTVQH-SPYAVQHSPYTVQHS--PYTVQHSPYTAQPIYSTAQFIYSTA 183
Query: 420 DPHTGDHKSQHET 458
P QH T
Sbjct: 184 QPIYSTAHRQHST 196
Score = 34.7 bits (76), Expect = 0.076
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 12/74 (16%)
Frame = +3
Query: 255 VEHSSYI--HASPVVQHFSP--VQHAP-VVHHAAI-----PIAVEHSDHVEDHAPAKYEF 404
V+HSSY H+ VQH SP VQH+P H++ P V+HS + H+P +
Sbjct: 57 VQHSSYTVQHSPYTVQH-SPYTVQHSPYTAQHSSCTVQHSPYTVQHSPYTVQHSPCTVQH 115
Query: 405 S-YSVE-DPHTGDH 440
S Y+V+ P T H
Sbjct: 116 SPYTVQHSPCTVQH 129
Score = 34.3 bits (75), Expect = 0.10
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Frame = +3
Query: 222 STCRSYCSRRPVEHSSYIHASPVVQHF--SP--VQHAP-VVHHAAIPIAVEHSDHVEDHA 386
ST + S +HS+ +H H SP VQH+P V H+ P V+HS + H+
Sbjct: 181 STAQPIYSTAHRQHST-VHTRNSTAHIQHSPYTVQHSPYTVQHS--PYTVQHSSYTVQHS 237
Query: 387 PAKYEFS-YSVE-DPHTGDHKS 446
P + S Y+V+ P+T H S
Sbjct: 238 PYTVQHSPYTVQHSPYTVQHSS 259
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 34.7 bits (76), Expect = 0.076
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 172 PVLSHAAPVLTHAAPLIQHAGPIVHAAPWNILRIY 276
PV+ H AP++ H P++ H P+V AP + +Y
Sbjct: 463 PVVYHQAPLVVHKPPIVYHRPPVVMPAPIYHMPVY 497
Score = 32.3 bits (70), Expect = 0.40
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 109 VSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
V+ I+ H P H ++ H AP+L H P++ H P+V P
Sbjct: 21 VNRPPIIYHPPPE---VYHRPEIVVHRAPILIHRPPIVYHQPPVVVHRP 66
Score = 31.1 bits (67), Expect = 0.93
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 109 VSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
V+ I+ H P H ++ H AP++ H P+I H P++ P
Sbjct: 1517 VNRPPIIYHPPPE---VYHRPDIVVHRAPIVLHRPPIIYHQPPVIVHRP 1562
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 109 VSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHA 249
V SIV H +PS H P++ H PV+ H P + H P++H+
Sbjct: 725 VHRPSIVYH-QPS--VVVHRPPIIYHQPPVMFHQPPPLVHQ-PVLHS 767
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 130 RHDEPSHQA--TAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
R D H+A H P++ H PV+ H ++ H PIV P
Sbjct: 1533 RPDIVVHRAPIVLHRPPIIYHQPPVIVHRPAVVYHQPPIVFHQP 1576
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 163 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
H P++ H PV+ H ++ H PIV P
Sbjct: 50 HRPPIVYHQPPVVVHRPAVVYHQPPIVFHQP 80
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 175 VLSHAAPVLTHAAPLIQHAGPIVHAAP 255
V+ PV+ H APL+ H PIV+ P
Sbjct: 457 VIVQRPPVVYHQAPLVVHKPPIVYHRP 483
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 163 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
H ++ H A V+ H P++ H P+V P
Sbjct: 268 HQPSIVYHQASVVIHRPPIVYHQPPVVFHQP 298
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 163 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
H ++ H V+ H P+I H+ P+V P
Sbjct: 1084 HQPSIVYHQPSVVVHRPPIIYHSPPVVFHQP 1114
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 163 HYTPVLSHAAPVLTHAAPLIQHAGP-IVHAAP 255
H V+ H APV+ H ++ H P +VH P
Sbjct: 1384 HRPSVVLHQAPVVVHRPAVVYHQPPVVVHQPP 1415
>SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043)
Length = 908
Score = 34.3 bits (75), Expect = 0.10
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +1
Query: 103 HAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPWNILRIYML 282
H + + +R+ PS+ T + P+ P T ++H + ++ P N L + +
Sbjct: 755 HTLKYLTTLRYSGPSN--TPLHFPIPDPRKPRYTSLFRTLEHLTTLRYSTPSNTLLYFAI 812
Query: 283 R--Q*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRS 396
+ + ++L + L+ TTLR+ PSNT + I PR+
Sbjct: 813 PHPRTPHYTSLFHTLEHLTTLRYSGPSNTSLHFAIPHPRT 852
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +3
Query: 270 YIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQ 449
Y S + HF+ + H + H+ ++ ++H P+K +++ DP T + S
Sbjct: 695 YFGPSNTLLHFA-IPHPQIPHYTSLFRTLKHPTTFPYSGPSKTSLHFAISDPRTPYYTSL 753
Query: 450 HET 458
T
Sbjct: 754 FHT 756
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 301 SALCNMLQSCTTLRFQLPSNTPIMSKIMLPR 393
++L + L+ TTLR+ PSNTP+ I PR
Sbjct: 751 TSLFHTLKYLTTLRYSGPSNTPLHFPIPDPR 781
>SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1457
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 258 EHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDH--VEDHAP 389
EHS SPV +HFS +H+PV + + S+H V +H+P
Sbjct: 1324 EHSPVSEHSPVSEHFSVSEHSPVSKQSPVSEQSPVSEHSPVSEHSP 1369
Score = 31.9 bits (69), Expect = 0.53
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 258 EHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 425
EHS S V +H S +H+PV H+ P++ EH V +H+P + S + P
Sbjct: 1306 EHSRVSEHSSVSEHSSVSEHSPVSEHS--PVS-EHFS-VSEHSPVSKQSPVSEQSP 1357
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +3
Query: 249 RPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 425
R EHSS S V +H +H+PV H ++ EHS V +P + S P
Sbjct: 1309 RVSEHSSVSEHSSVSEHSPVSEHSPVSEHFSVS---EHSP-VSKQSPVSEQSPVSEHSP 1363
>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
Length = 1495
Score = 33.5 bits (73), Expect = 0.18
Identities = 23/58 (39%), Positives = 28/58 (48%)
Frame = -3
Query: 345 ESQRGARLEHVAQG*SVGLLAKHVYTKNVPRGGVNNRTGMLNQRGCVSQYWSSMTQYW 172
+SQ GA VAQG +VGL A Y NV + GV+ M Q Q + TQ W
Sbjct: 189 QSQGGASTAPVAQGGAVGLPANEQYQGNVTQQGVS----MQQQYQWQQQPYQQQTQQW 242
>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
Length = 1099
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 142 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGP-IVHAAPWNILR 270
PSH H P++ H P++ H PLI H P +VH P I R
Sbjct: 953 PSH--LIHRPPIILHRPPLIVHRHPLIFHRPPLLVHRMPIIIRR 994
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 273 IHASPVVQHFSP-VQHAP-VVHHAAIPIAVEHSDHVEDHAP 389
IH P++ H P + H P +VHH + + HS HV H P
Sbjct: 1020 IHRMPILIHHHPWLIHRPAIVHHYGPNLMISHSHHVIHHYP 1060
Score = 32.7 bits (71), Expect = 0.31
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 163 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
H ++ H AP++ H AP+I H P+V P
Sbjct: 316 HRPDIVVHRAPIMIHRAPIIYHQPPVVVHRP 346
Score = 32.7 bits (71), Expect = 0.31
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 88 DEGHGHAVSSQSIVRHDEPS--HQA--TAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
D+ + + I+ H P H+ H P++ H AP++ H P+I H IV+ P
Sbjct: 453 DKKNNVIIKRPPIIYHPPPEIFHRPDIVVHRAPLMVHRAPIIYHQPPVIVHRPAIVYHQP 512
Score = 32.7 bits (71), Expect = 0.31
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 163 HYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAPWNILR 270
H P++ H ++ H PLI H PI +H PW I R
Sbjct: 1000 HRMPLIVHRPDLMVHRPPLIIHRMPILIHHHPWLIHR 1036
Score = 32.3 bits (70), Expect = 0.40
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 163 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
H P++ H AP++ H P++ H IV+ P
Sbjct: 323 HRAPIMIHRAPIIYHQPPVVVHRPAIVYHQP 353
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 163 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
H ++ H AP++ + AP+I H P+V P
Sbjct: 691 HRPDIIVHRAPIVLYRAPIIYHQPPVVVHRP 721
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Frame = +1
Query: 103 HAVSSQSIVRHDEP----SHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
H + I+ H P H H P+L H P++ PL+ H P++ P
Sbjct: 955 HLIHRPPIILHRPPLIVHRHPLIFHRPPLLVHRMPIIIRRPPLLIHRMPLIVHRP 1009
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 163 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
H P++ H PV+ H ++ H PI+ P
Sbjct: 173 HRPPIIYHQPPVIVHRPAVVYHQPPIIFHQP 203
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +1
Query: 109 VSSQSIVRHDEPS--HQA--TAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
V+ I+ H P H+ H P++ H P++ H P+I H +V+ P
Sbjct: 144 VNRPPIIYHPPPEIYHRPDIVVHRPPLVIHRPPIIYHQPPVIVHRPAVVYHQP 196
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 163 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
H P + H ++ H AP++ H PI++ P
Sbjct: 309 HPPPEIYHRPDIVVHRAPIMIHRAPIIYHQP 339
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 121 SIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
S+V H P H P + H ++ H AP++ + PI++ P
Sbjct: 673 SVVIHRPP---IIYHPPPEIYHRPDIIVHRAPIVLYRAPIIYHQP 714
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 163 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPWNILR 270
H P++ H PV+ H ++ H IV P ++R
Sbjct: 330 HRAPIIYHQPPVVVHRPAIVYHQPSIVFHQPPPVVR 365
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 163 HYTPVLSHAAPVLTHAAPLIQHAGP-IVHAAP 255
H P+L H L H P+I H P IVH P
Sbjct: 944 HRPPILFHPPSHLIHRPPIILHRPPLIVHRHP 975
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 163 HYTPVLSHAAPVLTHAAPLIQHAGPIVH 246
H P++ H P+L H P + H IVH
Sbjct: 1014 HRPPLIIHRMPILIHHHPWLIHRPAIVH 1041
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 115 SQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAP 255
++S E + P++ H P + H ++ H PI +H AP
Sbjct: 286 TKSKTEKGEKKNSVVIRRPPIIYHPPPEIYHRPDIVVHRAPIMIHRAP 333
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 130 RHDEPSHQAT--AHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPW 258
R D H+A H P++ H PV+ H ++ H +V P+
Sbjct: 476 RPDIVVHRAPLMVHRAPIIYHQPPVIVHRPAIVYHQPELVFHQPF 520
>SB_8567| Best HMM Match : EB (HMM E-Value=2.3)
Length = 179
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -2
Query: 331 CTTGACCTGLKCWTTGEACIYEECSTG 251
C TGA C G++C +TG C ECSTG
Sbjct: 128 CPTGAHCEGVEC-STGTHCEGVECSTG 153
>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
Length = 998
Score = 33.1 bits (72), Expect = 0.23
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -3
Query: 546 LWWSAVYSTLR-MDHQAGVESIRLSRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRH 370
++W Y+ +R DH A I L++ G+ +RR RR ++HTSRE+ R
Sbjct: 405 VFWICKYTQVRGEDHMAATRRI-LTQDRRLCINAGSHERRKRKRRRKRKSHTSREN--RL 461
Query: 369 DRSVRR 352
D S RR
Sbjct: 462 DISARR 467
>SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 163 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPWNILRIYMLRQ*SN 297
H P L H P+L H P++ H P++ I ++Y + Q N
Sbjct: 80 HTRPTLGHTRPMLGHTRPMLGHTHPLLGHTCRLIAKVYSVGQNCN 124
>SB_30517| Best HMM Match : HLH (HMM E-Value=6.9e-15)
Length = 178
Score = 32.7 bits (71), Expect = 0.31
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +3
Query: 321 PVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKGEYSLLQ 500
P+ HH + +D++ H P++ + D H H QH+ D D KG Y+L
Sbjct: 3 PLTHHGQTAVPY-FTDNLMMHEPSQA----CLADGHRLHH--QHQDFDPDFAKGIYNLRP 55
Query: 501 PDGPSARSNTQLTTTTGFN 557
GP N+ + T F+
Sbjct: 56 RSGPGIAPNSPIKTDEEFH 74
>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
Length = 958
Score = 31.9 bits (69), Expect = 0.53
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Frame = +1
Query: 103 HAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPWNILRIYML 282
H + + +R+ PS+ T + P+ P T ++H + ++ P N + +
Sbjct: 704 HTLKYLTTLRYSGPSN--TPLHFPIPDPRKPRYTSLFRTLEHLTTLRYSTPSNTSLHFAI 761
Query: 283 R--Q*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRS 396
+ + ++L + L+ TTLR+ PSNT + I PR+
Sbjct: 762 PHPRTPHYTSLFHTLEHLTTLRYSTPSNTLLYFAIPHPRT 801
Score = 31.1 bits (67), Expect = 0.93
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = +1
Query: 103 HAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPWNILRIYML 282
H + + +R+ PS+ T + + P T ++H + ++ P N + +
Sbjct: 844 HTLEHLTTLRYSTPSN--TLLHFAIPDPRTPYYTSLFHTLEHLTTLRYSGPSNTSLHFAI 901
Query: 283 R--Q*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRS 396
+ + ++L + L+ TTLR+ PSNT + I PR+
Sbjct: 902 PHPRTPHYTSLFHTLEHLTTLRYSTPSNTSLHFAIPHPRT 941
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +1
Query: 127 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPWNILRIYMLR--Q*SNT 300
+R+ PS+ T+ + + P T ++H + ++ P N L + + + +
Sbjct: 747 LRYSTPSN--TSLHFAIPHPRTPHYTSLFHTLEHLTTLRYSTPSNTLLYFAIPHPRTPHY 804
Query: 301 SALCNMLQSCTTLRFQLPSNTPIMSKIMLPRS 396
++L L+ TTLR+ PSNT + I PR+
Sbjct: 805 TSLFRTLKYLTTLRYSTPSNTSLHFAIPHPRT 836
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +3
Query: 270 YIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQ 449
Y S + HF+ + H + H+ ++ ++H P+K +++ DP T + S
Sbjct: 644 YFGPSNTLLHFA-IPHPQIPHYTSLFRTLKHPTTFPYSGPSKTSLHFAISDPRTPYYTSL 702
Query: 450 HET 458
T
Sbjct: 703 FHT 705
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 301 SALCNMLQSCTTLRFQLPSNTPIMSKIMLPR 393
++L + L+ TTLR+ PSNTP+ I PR
Sbjct: 700 TSLFHTLKYLTTLRYSGPSNTPLHFPIPDPR 730
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = +1
Query: 103 HAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPWNILRIYML 282
H + + +R+ PS+ T Y + P T +++ + ++ P N + +
Sbjct: 774 HTLEHLTTLRYSTPSN--TLLYFAIPHPRTPHYTSLFRTLKYLTTLRYSTPSNTSLHFAI 831
Query: 283 R--Q*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRS 396
+ + ++L + L+ TTLR+ PSNT + I PR+
Sbjct: 832 PHPRTPHYTSLFHTLEHLTTLRYSTPSNTLLHFAIPDPRT 871
>SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6)
Length = 249
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 163 HY-TPVLSHAAPVLTHAAPLIQHAGPIVH 246
HY TP+ H P L H PL QH P+ H
Sbjct: 62 HYKTPLRHHKTPYLQHKTPLRQHKTPLRH 90
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 130 RHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAP 255
+H P Q H TP+ H P+ H PL QH P+ H P
Sbjct: 146 QHKTPLRQ---HKTPLRQHKTPLRQHKTPLRQHKTPLRQHKTP 185
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 130 RHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAP 255
+H P Q H TP+ H P+ H PL QH P+ H P
Sbjct: 153 QHKTPLRQ---HKTPLRQHKTPLRQHKTPLRQHKTPLRQHKTP 192
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 130 RHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPI 240
+H P Q H TP+ H P+ H PL QH P+
Sbjct: 160 QHKTPLRQ---HKTPLRQHKTPLRQHKTPLRQHKTPL 193
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 130 RHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAP 255
+H P Q H TP+ H P+ + PL QH P+ H P
Sbjct: 118 QHKTPLRQ---HKTPLRQHKTPLRQYKTPLRQHKTPLRQHKTP 157
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 130 RHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAP 255
+H P Q H TP+ + P+ H PL QH P+ H P
Sbjct: 125 QHKTPLRQ---HKTPLRQYKTPLRQHKTPLRQHKTPLRQHKTP 164
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 130 RHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAP 255
+H P Q + TP+ H P+ H PL QH P+ H P
Sbjct: 132 QHKTPLRQ---YKTPLRQHKTPLRQHKTPLRQHKTPLRQHKTP 171
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 130 RHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 228
+H P Q H TP+ H P+ H PL QH
Sbjct: 167 QHKTPLRQ---HKTPLRQHKTPLRQHKTPLRQH 196
>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1446
Score = 30.7 bits (66), Expect = 1.2
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Frame = +1
Query: 112 SSQSIVRHDEPSHQATA-HYTPVLSHAAPVLTHAAP---LIQHAGPIVHAAPWNILRIYM 279
SS + + H P+H ATA T L H + + +P + H P + +
Sbjct: 969 SSTASLAHTSPAHLATASQITHPLPHRTISIPYPSPPHTTSSQSSQATHTPPPRAVDLPH 1028
Query: 280 LRQ*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHIPSRIPTPAITS 444
++SAL + + L + +NT I S+ P S +S PS T T+
Sbjct: 1029 PSSPHSSSALYSSPSRTSNLPYTTYTNTAISSQPSPPYSSTSPHPSHFSTRVSTN 1083
>SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 103 HAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 228
H +S IVRH + S H+ + H + H++ +I+H
Sbjct: 31 HHQTSSDIVRHHQTSSDIIRHHQTFIRHHQTFIRHSSDIIRH 72
>SB_46011| Best HMM Match : DNA_ligase_ZBD (HMM E-Value=2.9)
Length = 373
Score = 30.7 bits (66), Expect = 1.2
Identities = 39/158 (24%), Positives = 60/158 (37%), Gaps = 3/158 (1%)
Frame = +1
Query: 52 CSILAICQGGVIDEGHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHA 231
C L I G+ + H +S + HD Q T HY P L P +T L +H
Sbjct: 93 CPTLLIKTPGITAQ---HCLSKHPALLHDIDC-QNTRHYCPTLLIKTPGITAQYCLSKHP 148
Query: 232 GPIVHAAPWNILRIYMLRQ*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHI 411
+ + A N YM + + L N+ +C R P+ I +S H
Sbjct: 149 ALLPNIACQNTRHYYMTLLVKHAALLPNI--ACQNTRRYCPTLLMKTPGITAQHCLSKH- 205
Query: 412 PSRIPTPAITSPNTK---PVMVMS*KANTLYSSLMVHP 516
P +P I NT+ P++++ T L +P
Sbjct: 206 PVLLPN--IACQNTRHYCPILLVKIPGITAQYCLSKYP 241
>SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8)
Length = 476
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 276 HASPVVQHFSPV-QHA-PVVHHAAIPIAVEHSDHVEDHA 386
H+ P+ H P+ H+ P+ H+ P+ +HSDHV DH+
Sbjct: 435 HSDPLTDHSDPLTDHSDPLTDHSD-PLT-DHSDHVTDHS 471
>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
Length = 2119
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 453 ETRDGDVVKGEYSLLQPDGPSARSNTQLTTTTGFN 557
+T+D + K EY+L QP GP A + T+T +N
Sbjct: 289 QTKDAQIFKDEYALYQP-GPVATKDFPSITSTKYN 322
>SB_58551| Best HMM Match : GLTT (HMM E-Value=5.7e-23)
Length = 272
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 349 IGIAAWCTTGACCTGLKCWTTG 284
IG CTTG C TG+ WTTG
Sbjct: 97 IGTTGICTTGICTTGI--WTTG 116
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -2
Query: 349 IGIAAWCTTGACCTGL---KCWTTGEACIYEECSTG 251
IG CTTG C TG+ +TTG C C+TG
Sbjct: 187 IGTTGICTTGICTTGICTTGIFTTG-ICTTGICTTG 221
>SB_38752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 441 KSQHETRDGDVVKGEYS-LLQPDGPSARSNTQLTTTTGFNAIVHNSE 578
+S + D + +KG Y+ L + GP+ R +TQLT T G + SE
Sbjct: 30 ESLQQASDVNDMKGFYNGLREMYGPAKRGSTQLTATDGCTILQEKSE 76
>SB_34294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 148 HQATAHYTPVLSHAAPVLTHAAPLIQHAGP 237
H H TP HA P HA P HA P
Sbjct: 38 HPYKNHATPYKDHATPYKDHATPYKDHATP 67
>SB_31111| Best HMM Match : PAPA-1 (HMM E-Value=0.75)
Length = 379
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 441 KSQHETRDGDVVKGEYS-LLQPDGPSARSNTQLTTTTGFNAIVHNSE 578
+S + D + +KG Y+ L + GP+ R +TQLT T G + SE
Sbjct: 261 ESLQQASDVNDMKGFYNGLREVYGPAKRGSTQLTATDGCTILQEKSE 307
>SB_10659| Best HMM Match : PAPA-1 (HMM E-Value=0.75)
Length = 498
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 441 KSQHETRDGDVVKGEYS-LLQPDGPSARSNTQLTTTTGFNAIVHNSE 578
+S + D + +KG Y+ L + GP+ R +TQLT T G + SE
Sbjct: 172 ESLQQASDVNDMKGFYNGLREVYGPAKRGSTQLTATDGCTILQEKSE 218
>SB_2100| Best HMM Match : PAPA-1 (HMM E-Value=0.75)
Length = 403
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 441 KSQHETRDGDVVKGEYS-LLQPDGPSARSNTQLTTTTGFNAIVHNSE 578
+S + D + +KG Y+ L + GP+ R +TQLT T G + SE
Sbjct: 111 ESLQQASDVNDMKGFYNGLREVYGPAKRGSTQLTATDGCTILQEKSE 157
>SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 441 KSQHETRDGDVVKGEYS-LLQPDGPSARSNTQLTTTTGFNAIVHNSE 578
+S + D + +KG Y+ L + GP+ R +TQLT T G + SE
Sbjct: 1224 ESLQQASDVNDMKGFYNGLREVYGPAKRGSTQLTATDGCTILQEKSE 1270
>SB_28441| Best HMM Match : GLTT (HMM E-Value=3.7e-28)
Length = 447
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = -2
Query: 349 IGIAAWCTTGACCTGLKCWTTGEACIYEECSTG 251
IG CTTG C TG+ C TTG C C+TG
Sbjct: 387 IGTTGICTTGICTTGI-C-TTG-ICTTGICTTG 416
>SB_24531| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00083)
Length = 478
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 441 KSQHETRDGDVVKGEYS-LLQPDGPSARSNTQLTTTTGFNAIVHNSE 578
+S + D + +KG Y+ L + GP+ R +TQLT T G + SE
Sbjct: 400 ESLQQASDVNDMKGFYNGLREVYGPAKRGSTQLTATDGCTILQEKSE 446
>SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)
Length = 1582
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 441 KSQHETRDGDVVKGEYS-LLQPDGPSARSNTQLTTTTGFNAIVHNSE 578
+S + D + +KG Y+ L + GP+ R +TQLT T G + SE
Sbjct: 1140 ESLQQASDVNDMKGFYNGLREMYGPAKRGSTQLTATDGCTILQEKSE 1186
>SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 384 APAKYEFSYSVEDPHTGDHKS-QHETRDGDVVKGEYSLLQPDGPSARSNTQL 536
A A Y F S+ G+ +S + E +GD + GE S PD P + S Q+
Sbjct: 388 AAAAYYFRKSLVSTFYGEEESGEDEGTEGDEMGGEASKTTPDTPVSASGPQM 439
>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
Length = 1153
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +1
Query: 331 TTLRFQLPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPV 462
+TL L S TP + + PR++ S +PS PT T P KPV
Sbjct: 804 STLIATLQSPTPQTTTVATPRTVISALPS--PTVVPTVPPAKPV 845
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -3
Query: 414 RNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG*SVGLLAKHVYTK 265
R R H ++ R++R+ +RQL AR+E +QG +GL + +T+
Sbjct: 1486 RGRRCH--EDNSRRYERAAQRQLNLDNTARVEQTSQG-QLGLRREEEHTR 1532
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = -2
Query: 706 YRARLKHWSRVNHRGRMDYWSGMSCGDGVDSRSPRWRCSVCVSSELCTIALNP 548
+R W+ ++ R ++ W + +G+D++ PR V +EL + + P
Sbjct: 618 HRETKAQWANLDRRDHLEDWVSPALVEGLDTQDPRASLVTTVLTELQALQVPP 670
>SB_29375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 637
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +3
Query: 252 PVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHT 431
PV+H+ + ++PV ++PVQ APV + V+H+ AP KY S HT
Sbjct: 264 PVKHTP-VQSAPV--KYTPVQSAPVKYRPVESAPVKHTP--VQSAPVKYTPVESAPVKHT 318
>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
Length = 2018
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 3 PRFSKASQHVLQNCCSLLDFGYLPRW 80
P F + ++ CCSL+D+G P W
Sbjct: 1128 PTFLTPTPATVRECCSLVDWGLQPCW 1153
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = +3
Query: 66 YLPRWCYRRGPRPCCVFPKHRSP*---RAFSSSNGTLYPSIESCCSSTDSRSPFDSTCRS 236
Y P R + V PK R+ R+FS+ L+ S+ ++TD S F S+ ++
Sbjct: 473 YTPSRSLRSANKNLLVIPKSRTKTYGDRSFSNIAAKLWNSLPLHITNTDCLSKFKSSLKT 532
Query: 237 YC-SRRPVEHSSYI 275
Y S P S +I
Sbjct: 533 YLFSMLPASFSRFI 546
>SB_38532| Best HMM Match : CRAM_rpt (HMM E-Value=2.1e-29)
Length = 263
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 183 SCCSSTDSRSPFDSTCRSYCS--RRPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPI 350
SC S+T S +T + + + + +S I + ++Q S +QHA V HHA + I
Sbjct: 199 SCNSATSCNSQHRTTMQHHATVQHHAISCNSAISCN-IMQQCSIMQHATVQHHAIVNI 255
>SB_43974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 474 VKGEYS-LLQPDGPSARSNTQLTTTTGFNAIVHNSE 578
+KG Y+ L + GP+ R +TQLT T G + SE
Sbjct: 247 LKGFYNGLREVYGPAKRGSTQLTATDGCTILQEKSE 282
>SB_41288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 112 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 228
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
>SB_35669| Best HMM Match : CCT (HMM E-Value=9.1)
Length = 101
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 112 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 228
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
>SB_31096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 384 APAKYEFSYSVEDPHTGDHKS-QHETRDGDVVKGEYSLLQPDGPSARSNTQL 536
A A Y F S+ G+ +S + E +GD G+ S PD P + S Q+
Sbjct: 21 AAAAYYFRKSIVSTFYGEEESGEDEGTEGDEEGGKASKTTPDTPVSASGPQM 72
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -3
Query: 177 YWGIMCRCLMRRLVMANDALGRHSMAVALVYNTTLANSQNRADYSN 40
Y G+MC + + +D+ RH M + L+ ++ ++R D N
Sbjct: 165 YIGVMCDRCSHKAIRKSDSKNRHDMELPLLLPPCNSSKRSRHDSEN 210
>SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 46 VVCSILAICQGGVIDEGHGHAVSSQSI 126
+V ++ I +GGV+D HG A+ S++I
Sbjct: 158 LVMAMETIGEGGVVDNSHGKALDSKNI 184
>SB_58339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 112 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 228
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
>SB_36300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = -3
Query: 447 GTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQ 307
G CDR+ + ++R + + HD+ +++ + + GAR E +++
Sbjct: 29 GACDRKAATIKSHIRQYVNEGHDVVTAANLQEAILADGGARGEGISE 75
>SB_33718| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 112 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 228
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
>SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 112 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 228
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
>SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2)
Length = 356
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 124 IVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
I+ H P H ++ H AP++ H +I H P+V P
Sbjct: 157 IIYHPPPE---VYHRPDIVVHRAPIMLHRPAIIYHQPPVVVHRP 197
>SB_4465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 112 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 228
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,012,097
Number of Sequences: 59808
Number of extensions: 581269
Number of successful extensions: 4161
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 3630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4105
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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