Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30287
(716 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF020267-1|AAC26597.1| 223|Homo sapiens myosin-IXb splice varia... 32 1.8
AY956763-1|AAX38250.1| 422|Homo sapiens heat shock protein 90Bb... 31 4.1
Z22555-1|CAA80277.1| 509|Homo sapiens CLA-1 protein. 31 5.4
BC112037-1|AAI12038.1| 509|Homo sapiens scavenger receptor clas... 31 5.4
BC093732-1|AAH93732.1| 509|Homo sapiens scavenger receptor clas... 31 5.4
BC080647-1|AAH80647.1| 509|Homo sapiens scavenger receptor clas... 31 5.4
AY228704-1|AAP15181.1| 553|Homo sapiens forkhead winged/helix t... 31 5.4
AL034344-3|CAB81658.1| 553|Homo sapiens forkhead box C1 protein. 31 5.4
AF515445-1|AAQ08185.1| 474|Homo sapiens scavenger receptor clas... 31 5.4
AF078096-1|AAC72915.1| 553|Homo sapiens forkhead/winged helix-l... 31 5.4
AF048693-1|AAC18081.1| 553|Homo sapiens transcription factor fo... 31 5.4
AB209436-1|BAD92673.1| 581|Homo sapiens Scavenger receptor clas... 31 5.4
>AF020267-1|AAC26597.1| 223|Homo sapiens myosin-IXb splice variant
protein.
Length = 223
Score = 32.3 bits (70), Expect = 1.8
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 319 LQSCTTLRFQLPSNTPIMS--KIMLPRSMSSHIPSRIP 426
L S T+R + P TPIMS I LP + SH+P P
Sbjct: 110 LSSFVTVRVKTPRRTPIMSTANIKLPPGLPSHLPRWAP 147
>AY956763-1|AAX38250.1| 422|Homo sapiens heat shock protein 90Bb
protein.
Length = 422
Score = 31.1 bits (67), Expect = 4.1
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -2
Query: 229 HVESKGLRESVLEQHDSILGYNVPLLDEKARHGERCFGKTQHGRGPR 89
++E ++E V+E+H LGY + L EK R E GK + +G +
Sbjct: 155 YLEEMQVKE-VVEKHSQFLGYPITLYLEKEREKEISDGKAEEEKGEK 200
>Z22555-1|CAA80277.1| 509|Homo sapiens CLA-1 protein.
Length = 509
Score = 30.7 bits (66), Expect = 5.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 153 SNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPVEHSSYIHASPVV 293
+NG++YP E C +S STCR + + + H +++A PV+
Sbjct: 309 ANGSIYPPNEGFCPCLESGIQNVSTCR-FSAPLFLSHPHFLNADPVL 354
>BC112037-1|AAI12038.1| 509|Homo sapiens scavenger receptor class
B, member 1 protein.
Length = 509
Score = 30.7 bits (66), Expect = 5.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 153 SNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPVEHSSYIHASPVV 293
+NG++YP E C +S STCR + + + H +++A PV+
Sbjct: 309 ANGSIYPPNEGFCPCLESGIQNVSTCR-FSAPLFLSHPHFLNADPVL 354
>BC093732-1|AAH93732.1| 509|Homo sapiens scavenger receptor class
B, member 1 protein.
Length = 509
Score = 30.7 bits (66), Expect = 5.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 153 SNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPVEHSSYIHASPVV 293
+NG++YP E C +S STCR + + + H +++A PV+
Sbjct: 309 ANGSIYPPNEGFCPCLESGIQNVSTCR-FSAPLFLSHPHFLNADPVL 354
>BC080647-1|AAH80647.1| 509|Homo sapiens scavenger receptor class
B, member 1 protein.
Length = 509
Score = 30.7 bits (66), Expect = 5.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 153 SNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPVEHSSYIHASPVV 293
+NG++YP E C +S STCR + + + H +++A PV+
Sbjct: 309 ANGSIYPPNEGFCPCLESGIQNVSTCR-FSAPLFLSHPHFLNADPVL 354
>AY228704-1|AAP15181.1| 553|Homo sapiens forkhead winged/helix
transcription factor mutant 2 protein.
Length = 553
Score = 30.7 bits (66), Expect = 5.4
Identities = 25/74 (33%), Positives = 30/74 (40%)
Frame = +3
Query: 117 PKHRSP*RAFSSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPVEHSSYIHASPVVQ 296
P+ SP A S + P IES SS+ S S S S S RP+ A P
Sbjct: 237 PQPLSPAAALGSGSAAAVPKIESPDSSSSSLSSGSSPPGSLPSARPLSLDGADSAPP--- 293
Query: 297 HFSPVQHAPVVHHA 338
P AP HH+
Sbjct: 294 --PPAPSAPPPHHS 305
>AL034344-3|CAB81658.1| 553|Homo sapiens forkhead box C1 protein.
Length = 553
Score = 30.7 bits (66), Expect = 5.4
Identities = 25/74 (33%), Positives = 30/74 (40%)
Frame = +3
Query: 117 PKHRSP*RAFSSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPVEHSSYIHASPVVQ 296
P+ SP A S + P IES SS+ S S S S S RP+ A P
Sbjct: 237 PQPLSPAAALGSGSAAAVPKIESPDSSSSSLSSGSSPPGSLPSARPLSLDGADSAPP--- 293
Query: 297 HFSPVQHAPVVHHA 338
P AP HH+
Sbjct: 294 --PPAPSAPPPHHS 305
>AF515445-1|AAQ08185.1| 474|Homo sapiens scavenger receptor class B
type III protein.
Length = 474
Score = 30.7 bits (66), Expect = 5.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 153 SNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPVEHSSYIHASPVV 293
+NG++YP E C +S STCR + + + H +++A PV+
Sbjct: 274 ANGSIYPPNEGFCPCLESGIQNVSTCR-FSAPLFLSHPHFLNADPVL 319
>AF078096-1|AAC72915.1| 553|Homo sapiens forkhead/winged helix-like
transcription factor 7 protein.
Length = 553
Score = 30.7 bits (66), Expect = 5.4
Identities = 25/74 (33%), Positives = 30/74 (40%)
Frame = +3
Query: 117 PKHRSP*RAFSSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPVEHSSYIHASPVVQ 296
P+ SP A S + P IES SS+ S S S S S RP+ A P
Sbjct: 237 PQPLSPAAALGSGSAAAVPKIESPDSSSSSLSSGSSPPGSLPSARPLSLDGADSAPP--- 293
Query: 297 HFSPVQHAPVVHHA 338
P AP HH+
Sbjct: 294 --PPAPSAPPPHHS 305
>AF048693-1|AAC18081.1| 553|Homo sapiens transcription factor
forkhead-like 7 protein.
Length = 553
Score = 30.7 bits (66), Expect = 5.4
Identities = 25/74 (33%), Positives = 30/74 (40%)
Frame = +3
Query: 117 PKHRSP*RAFSSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPVEHSSYIHASPVVQ 296
P+ SP A S + P IES SS+ S S S S S RP+ A P
Sbjct: 237 PQPLSPAAALGSGSAAAVPKIESPDSSSSSLSSGSSPPGSLPSARPLSLDGADSAPP--- 293
Query: 297 HFSPVQHAPVVHHA 338
P AP HH+
Sbjct: 294 --PPAPSAPPPHHS 305
>AB209436-1|BAD92673.1| 581|Homo sapiens Scavenger receptor class B
member 1 variant protein.
Length = 581
Score = 30.7 bits (66), Expect = 5.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 153 SNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPVEHSSYIHASPVV 293
+NG++YP E C +S STCR + + + H +++A PV+
Sbjct: 337 ANGSIYPPNEGFCPCLESGIQNVSTCR-FSAPLFLSHPHFLNADPVL 382
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,410,099
Number of Sequences: 237096
Number of extensions: 2639150
Number of successful extensions: 11498
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11493
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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