Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30287
(716 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 36 0.038
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 34 0.12
AF106579-5|AAC78198.1| 174|Caenorhabditis elegans Hypothetical ... 31 0.82
AL117204-37|CAB55148.2| 248|Caenorhabditis elegans Hypothetical... 30 1.9
U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related... 29 3.3
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 29 4.4
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ... 29 4.4
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ... 29 4.4
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 29 4.4
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 29 4.4
AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical... 29 4.4
U80844-4|AAB37974.1| 192|Caenorhabditis elegans Hypothetical pr... 28 5.8
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 28 5.8
U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical p... 28 7.7
AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical ... 28 7.7
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 35.5 bits (78), Expect = 0.038
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Frame = +3
Query: 264 SSYIHASPVVQHFSPVQHAPVVHHAAI--PIAVEHSDHVE--DHAPA--KYEF--SYSVE 419
S+ H+S +H + +PV + ++ P A EH +H E H+PA + EF S SV
Sbjct: 703 SNQFHSS---EHIEEARQSPVTNQESVHSPHASEHFEHREVVPHSPAASQEEFGRSPSVH 759
Query: 420 DPHTGDHKSQHE 455
PH +H HE
Sbjct: 760 SPHVSEHFEHHE 771
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 255 VEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPA 392
VE SSYIH+S +QH H P + ++H H P+
Sbjct: 87 VESSSYIHSSQQIQHPPQQHHPPPPSPPPVAETIQHQPHPSQQQPS 132
>AF106579-5|AAC78198.1| 174|Caenorhabditis elegans Hypothetical
protein F54E2.2 protein.
Length = 174
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 337 AWCTTGACCTGLKCWTTGEACIYEEC 260
+WCTT C G KC TG C Y C
Sbjct: 150 SWCTTDQDCKGKKCCPTG--CDYNVC 173
>AL117204-37|CAB55148.2| 248|Caenorhabditis elegans Hypothetical
protein Y116A8C.10b protein.
Length = 248
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +1
Query: 211 APLIQHAGPIVH-AAPWNILRIYMLRQ*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIML 387
A L+ H GP+ + + L+I +LR +N+ L SC + N+ S
Sbjct: 153 ADLVPHKGPVSYDRLHIDSLKI-ILRGSANSITLSRFFDSCLDRTRRTSLNSSSSSFFTK 211
Query: 388 PRSMSSHIPSRIPTPAITSPN 450
PRSM+ ++P + A + N
Sbjct: 212 PRSMTPNLPGASASAAAAAAN 232
>U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related
family protein 2 protein.
Length = 933
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 452 VLGLVIAGVGILDGI*ELILRGSMIFDMIGV 360
+LG+V AG+ IL G+ L L G D++GV
Sbjct: 304 ILGVVSAGIAILTGVGFLSLMGMPYNDIVGV 334
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 28.7 bits (61), Expect = 4.4
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Frame = +3
Query: 171 PSIESCCSSTDSRSPFDSTCRSYCSRRP----VEHSSYIHASPVVQHFSPVQHAPV-VHH 335
P E S + + FDS R+P V +S + S V SP+ P +H+
Sbjct: 296 PLFEMTARSGNGENGFDSFLA--IKRKPHDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHN 353
Query: 336 AAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHET-RDGDVVKGEYSLL 497
+ I + + H+ H +E V + SQH DG ++G ++ +
Sbjct: 354 LPVLIVMNNDGHLSTHRITLHEGVTGVGSDSQMSNFSQHNIYLDGPDIRGRHAAI 408
>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
protein W03F11.6e protein.
Length = 1039
Score = 28.7 bits (61), Expect = 4.4
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Frame = +3
Query: 171 PSIESCCSSTDSRSPFDSTCRSYCSRRP----VEHSSYIHASPVVQHFSPVQHAPV-VHH 335
P E S + + FDS R+P V +S + S V SP+ P +H+
Sbjct: 294 PLFEMTARSGNGENGFDSFLA--IKRKPHDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHN 351
Query: 336 AAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHET-RDGDVVKGEYSLL 497
+ I + + H+ H +E V + SQH DG ++G ++ +
Sbjct: 352 LPVLIVMNNDGHLSTHRITLHEGVTEVGSDSQMSNFSQHNIYLDGPDIRGRHAAI 406
>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
protein W03F11.6d protein.
Length = 1184
Score = 28.7 bits (61), Expect = 4.4
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Frame = +3
Query: 171 PSIESCCSSTDSRSPFDSTCRSYCSRRP----VEHSSYIHASPVVQHFSPVQHAPV-VHH 335
P E S + + FDS R+P V +S + S V SP+ P +H+
Sbjct: 294 PLFEMTARSGNGENGFDSFLA--IKRKPHDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHN 351
Query: 336 AAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHET-RDGDVVKGEYSLL 497
+ I + + H+ H +E V + SQH DG ++G ++ +
Sbjct: 352 LPVLIVMNNDGHLSTHRITLHEGVTEVGSDSQMSNFSQHNIYLDGPDIRGRHAAI 406
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 28.7 bits (61), Expect = 4.4
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Frame = +3
Query: 171 PSIESCCSSTDSRSPFDSTCRSYCSRRP----VEHSSYIHASPVVQHFSPVQHAPV-VHH 335
P E S + + FDS R+P V +S + S V SP+ P +H+
Sbjct: 294 PLFEMTARSGNGENGFDSFLA--IKRKPHDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHN 351
Query: 336 AAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHET-RDGDVVKGEYSLL 497
+ I + + H+ H +E V + SQH DG ++G ++ +
Sbjct: 352 LPVLIVMNNDGHLSTHRITLHEGVTEVGSDSQMSNFSQHNIYLDGPDIRGRHAAI 406
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 28.7 bits (61), Expect = 4.4
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Frame = +3
Query: 171 PSIESCCSSTDSRSPFDSTCRSYCSRRP----VEHSSYIHASPVVQHFSPVQHAPV-VHH 335
P E S + + FDS R+P V +S + S V SP+ P +H+
Sbjct: 294 PLFEMTARSGNGENGFDSFLA--IKRKPHDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHN 351
Query: 336 AAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHET-RDGDVVKGEYSLL 497
+ I + + H+ H +E V + SQH DG ++G ++ +
Sbjct: 352 LPVLIVMNNDGHLSTHRITLHEGVTEVGSDSQMSNFSQHNIYLDGPDIRGRHAAI 406
>AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical
protein Y18H1A.9 protein.
Length = 488
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +3
Query: 120 KHRSP*RAFSSSNGTLYPSIESCCSSTDSRSPFD 221
K+RSP + + G P +CC D FD
Sbjct: 247 KNRSPPKCIQQATGLFQPPTTTCCQGVDLNRNFD 280
>U80844-4|AAB37974.1| 192|Caenorhabditis elegans Hypothetical
protein C07D8.2 protein.
Length = 192
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 142 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPWNI 264
P A P S AAP LT AAP + P+ AA +++
Sbjct: 25 PQRSPMAPAAPTSSAAAPTLTAAAPPSSASAPMSSAAAYHL 65
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/64 (26%), Positives = 21/64 (32%)
Frame = +3
Query: 261 HSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDH 440
H + HA H HAP H H H H+PA + + E H H
Sbjct: 458 HGEHHHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHH--GHHGEHHHAPAH 515
Query: 441 KSQH 452
H
Sbjct: 516 HGHH 519
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/60 (28%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Frame = +3
Query: 276 HASPVVQ-HFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQH 452
H SP H HAP H H H E H + + H G H S H
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHH 556
>U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical
protein C33G8.2 protein.
Length = 390
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -3
Query: 474 RHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQR 334
RH HHG R G R G RRN S D D+ R+Q+ ++
Sbjct: 85 RHGHHG-RHGM-GRHGGHGRRNKSGSDSDSSDSSEDKKKRKQMRDKK 129
>AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical
protein Y119D3B.12a protein.
Length = 339
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = -3
Query: 498 GVESIRLSRHHHHGFRVGTC--DRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGAR 325
G + R + HHH R D R D R R H + R DR R S+R R
Sbjct: 271 GADRKRSTEQHHHSHRSSRDHRDHRHRDHRGEHREHREHKEHRRDDR--HRSERSERSER 328
Query: 324 LE 319
E
Sbjct: 329 SE 330
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,130,543
Number of Sequences: 27780
Number of extensions: 402939
Number of successful extensions: 1562
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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