Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30287
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.54 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.7  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = +1

Query: 94  GHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 255
           GHGH  S      H   SH AT H+     H+ P+   + P     G   H  P
Sbjct: 420 GHGH--SHIHATPHHHHSHAATPHH----QHSTPLAHSSYPAAIQIGHTPHHHP 467


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 137 SWRTMLWEDTAWPWPSS 87
           SW T++W D+   W  S
Sbjct: 93  SWMTLMWTDSHLSWKPS 109


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 366 DHVEDHAPAKYEFSYSVEDP 425
           DH  DHAP + E  + V DP
Sbjct: 340 DH-GDHAPKQTEVRFKVHDP 358


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 366 DHVEDHAPAKYEFSYSVEDP 425
           DH  DHAP + E  + V DP
Sbjct: 340 DH-GDHAPKQTEVRFKVHDP 358


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 195 STDSRSPFDSTCRSYCSRRPVEHSSYIHASP 287
           S+ SR+   S    YC RRP    S   A P
Sbjct: 32  SSISRNSNRSESSGYCGRRPSTFGSSNEALP 62


>AF023666-1|AAC14552.1|  363|Apis mellifera
          sn-glycerol-3-phosphate dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 60 NRADYSNFEEHVEM 19
          N A++SNFE+ V M
Sbjct: 26 NAANFSNFEDRVTM 39


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 712 MNYRARLKHWSRVNHRGRMDYWSGMSCGDGVDS 614
           MN   R+   +RVN   RMD    M   D +D+
Sbjct: 369 MNRMHRMNRVNRVNRMDRMDRIDRMDRMDRMDT 401


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 195 STDSRSPFDSTCRSYCSRRPVEHSSYIHASP 287
           S+ SR+   S    YC RRP    S   A P
Sbjct: 32  SSISRNSNRSESSGYCGRRPSTFGSSNEALP 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,611
Number of Sequences: 438
Number of extensions: 4871
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)