Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30287
(716 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t... 36 0.035
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 31 1.0
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 30 1.8
At5g07790.1 68418.m00892 expressed protein 29 4.1
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ... 28 5.4
At1g30420.1 68414.m03718 ATP-binding cassette transport protein,... 28 5.4
At5g31873.1 68418.m03777 hypothetical protein 28 7.1
At5g28120.1 68418.m03396 hypothetical protein 28 7.1
At5g28110.1 68418.m03395 hypothetical protein 28 7.1
At3g30816.1 68416.m03949 hypothetical protein 28 7.1
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 9.4
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 9.4
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 9.4
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 9.4
At1g30410.1 68414.m03717 ATP-binding cassette transport protein,... 27 9.4
>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein low similarity to
glucoamylase S1/S2 [Precursor] from Saccharomyces
cerevisiae [SP|P08640], proteophosphoglycan from
Leishmania major [GI:5420387]; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 256
Score = 35.5 bits (78), Expect = 0.035
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 127 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAA 252
VRH P +H +P +SH++P + ++P + H+ P+V A+
Sbjct: 165 VRHSSPP---VSHSSPPVSHSSPPTSRSSPAVSHSSPVVAAS 203
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 346 QLPSNTPIMSKIMLPRSMSSHIPSRIPTPAI-----TSPNTKPV 462
Q P+ + S++ P S S+ PS+ PTP + +PN+KPV
Sbjct: 726 QAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPV 769
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Frame = +3
Query: 138 RAFSSSNGTLYPSIESC--CSSTDSRSPFDSTCRSYCSRRPVEHSSYIHASPVVQHFSPV 311
R + N +P C CS S F ST +Y + Y V HF P
Sbjct: 183 RFLNCLNSLWHPECFRCYGCSQPISEYEF-STSGNYPFHKACYRERYHPKCDVCSHFIPT 241
Query: 312 QHAPVVHHAAIPIAVEH--SDHVEDHAP 389
HA ++ + A P V+ H D P
Sbjct: 242 NHAGLIEYRAHPFWVQKYCPSHEHDATP 269
>At5g07790.1 68418.m00892 expressed protein
Length = 616
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 381 HAPAKYEFSYSVEDPH-TGDHKSQHETRDGDVVKGEYSLLQPDGPSARSNTQL 536
H P+ F S DPH +G S+ ++ + KG S L + SA+ T L
Sbjct: 337 HCPSNKTFKGSDHDPHSSGQASSESQSNQTSMEKGSSSSLS-EAKSAKKGTSL 388
>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
identical to ubiquitin-specific protease 21 GI:11993482
[Arabidopsis thaliana]
Length = 732
Score = 28.3 bits (60), Expect = 5.4
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Frame = +3
Query: 96 PRPCCVFPKHRSP*RAFSSSNGTLYPSIESCCSSTDSRSPFDSTC-RSYCSRRPVEHSSY 272
P CC PK A SS+N I++ S S PF T ++ P E+ +Y
Sbjct: 526 PDSCCQEPKEEVFHSAESSNNEDSSAMIDA-LGSPQSEKPFAETSQQTEPESCPTENKAY 584
Query: 273 IHAS--PVVQHFSPVQHAPVVHHAAI 344
I S P + P + P A+I
Sbjct: 585 IDKSEKPFAETSQPKEPKPFADRASI 610
>At1g30420.1 68414.m03718 ATP-binding cassette transport protein,
putative contains Pfam profiles PF00005: ABC
transporter, PF00664: ABC transporter transmembrane
region
Length = 1488
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 137 SWRTMLWEDTAWPWPSSITPPWQIAKIEQTTAILKNMLRCLTE 9
SW T L + + P + WQ+ + +QT ++K RC TE
Sbjct: 241 SWMTPLMQ-LGYRKPITERDVWQLDQWDQTETLIKRFQRCWTE 282
>At5g31873.1 68418.m03777 hypothetical protein
Length = 271
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 435 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 304
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 196 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 238
>At5g28120.1 68418.m03396 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 435 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 304
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436
>At5g28110.1 68418.m03395 hypothetical protein
Length = 493
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 435 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 304
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436
>At3g30816.1 68416.m03949 hypothetical protein
Length = 342
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 435 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 304
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 231 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 273
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 361 TPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKP 459
+PI S P + S+ S +PA+TSP T P
Sbjct: 23 SPISSPTKSPTTPSAPTTSPTKSPAVTSPTTAP 55
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -3
Query: 483 RLSRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRH-DRSVRRQLESQ 337
R SRH H G R G + R R+HD R DR RR S+
Sbjct: 99 RSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSR 148
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -3
Query: 483 RLSRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRH-DRSVRRQLESQ 337
R SRH H G R G + R R+HD R DR RR S+
Sbjct: 99 RSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSR 148
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -3
Query: 483 RLSRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRH-DRSVRRQLESQ 337
R SRH H G R G + R R+HD R DR RR S+
Sbjct: 99 RSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSR 148
>At1g30410.1 68414.m03717 ATP-binding cassette transport protein,
putative similar to MgATP-energized glutathione
S-conjugate pump [Arabidopsis thaliana] GI:2909781;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1495
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 74 WQIAKIEQTTAILKNMLRCLTE 9
WQ+ K +QT ++K RC TE
Sbjct: 261 WQLDKWDQTETLIKRFQRCWTE 282
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,211,553
Number of Sequences: 28952
Number of extensions: 375845
Number of successful extensions: 1436
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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