Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30286
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    28   1.5  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   6.1  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    25   8.1  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   8.1  

>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 355 DAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESD 483
           DA++ +   +E I E   T  +Y IRT+S  Y+  Y  S   D
Sbjct: 215 DAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSED 257


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 444  ILRTTVRQEPGIGLKRRHVG 503
            ++ T +  +PG  LK+RH+G
Sbjct: 1171 MMPTNIEHDPGCTLKKRHIG 1190


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +1

Query: 490 GDTSGHSRDCACRCAWPIAMKTRASMKAQLKPMLKH 597
           GD  G + D   RC W +  K     KA+  P L H
Sbjct: 54  GDPLGPTGDGG-RCVWNVLNKGTRFFKAEFNPSLVH 88


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +3

Query: 459 VRQEPGIGLKRRHVGTLKRLCVSLCMANRDENQGIDEGSAKADAEALGRRW*RSMGNRRI 638
           V  +PG   +RR    + +  V+ CM   +    ID   AK   E LG R  + M +  I
Sbjct: 449 VPSKPGRRGRRREKNPMGQKIVNACMETMEGYYAIDNLIAK--CEFLGNRISKGMASWGI 506

Query: 639 NLQL 650
            L++
Sbjct: 507 KLEM 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,493
Number of Sequences: 5004
Number of extensions: 49848
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)