Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30285
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   7.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 481 ENLKENFVQEHTVFL 437
           +NL  NFV + TVFL
Sbjct: 322 QNLTVNFVDQSTVFL 336


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 70  VCNETLKPKIMKQQYQK 120
           +   TL PK+ ++Q+QK
Sbjct: 335 ILKSTLTPKLARKQFQK 351


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 638 KRFYINDIIKISFIF*VPIINYCCMVFYIS 727
           K F+I   I  S +  + ++  CC+++  S
Sbjct: 54  KHFHIGLAIIYSMLLIMSLVGNCCVIWIFS 83


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 638 KRFYINDIIKISFIF*VPIINYCCMVFYIS 727
           K F+I   I  S +  + ++  CC+++  S
Sbjct: 54  KHFHIGLAIIYSMLLIMSLVGNCCVIWIFS 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,686
Number of Sequences: 438
Number of extensions: 3949
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)