Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30284
         (724 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2DBR8 Cluster: Putative uncharacterized protein; n=1; ...    36   1.3  
UniRef50_A6UVY4 Cluster: CRISPR-associated RAMP protein, Csm5 fa...    33   5.4  
UniRef50_Q9RBI5 Cluster: SalD; n=2; Acinetobacter sp. ADP1|Rep: ...    33   7.1  

>UniRef50_A2DBR8 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 596

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -3

Query: 77  LKGFNSFYKSSSRYYNLISPFHF 9
           L  FNS ++ +S+YYNL++P HF
Sbjct: 75  LTNFNSIFEQNSQYYNLVAPIHF 97


>UniRef50_A6UVY4 Cluster: CRISPR-associated RAMP protein, Csm5
           family; n=1; Methanococcus aeolicus Nankai-3|Rep:
           CRISPR-associated RAMP protein, Csm5 family -
           Methanococcus aeolicus Nankai-3
          Length = 385

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 133 EL*RHSLPNEITVVKNTLIRVYRNNTGTVFFTLGTGSSVLKRVF*LL 273
           EL    LP+E     N L+   +NN  + + T+G+GSS L +   LL
Sbjct: 276 ELNNKYLPDETIKFYNNLLNNIKNNDNSFYLTIGSGSSYLSKTIYLL 322


>UniRef50_Q9RBI5 Cluster: SalD; n=2; Acinetobacter sp. ADP1|Rep:
           SalD - Acinetobacter sp. (strain ADP1)
          Length = 386

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = +1

Query: 145 HSLPNEITVVKNTLIRVYRNNTGTVFFTLGTGSSVLKRVF*LLDRVRVNSNLYGVGTAPG 324
           +S  + +   ++TL+  Y N      +T+G G  +      L     VN  L G G + G
Sbjct: 309 YSHADSVVDAQDTLVNFYANAVANQSWTIGYGHDLGFATLNLSYEYAVNKTLNGTGNSTG 368

Query: 325 TAANISNRSNYIQI 366
           T  N+SN+++ I +
Sbjct: 369 T--NLSNQNHVITL 380


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,617,146
Number of Sequences: 1657284
Number of extensions: 12845607
Number of successful extensions: 27172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27085
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)