Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30284
         (724 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    22   5.8  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   5.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   7.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  

>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 360 YVVGSIAYVCRCSGRCSNSIQI*VNSYAIEKLK 262
           Y V +   +  C   C+    I   SY++EKLK
Sbjct: 268 YTVNASTNIFLCDEICNEGQTILGISYSLEKLK 300


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 360 YVVGSIAYVCRCSGRCSNSIQI*VNSYAIEKLK 262
           Y V +   +  C   C+    I   SY++EKLK
Sbjct: 268 YTVNASTNIFLCDEICNEGQTILGISYSLEKLK 300


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -2

Query: 582 AGDVTGYIQLPLVPQEYNQWL 520
           A   TG++  P++ Q  + W+
Sbjct: 235 AAQATGFVVWPIIEQRADLWI 255


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -2

Query: 582 AGDVTGYIQLPLVPQEYNQWL 520
           A   TG++  P++ Q  + W+
Sbjct: 235 AAQATGFVVWPIIEQRADLWI 255


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 566 PVTSPAPTHVLMHFHHPQ 619
           P  SPA  +   H +HPQ
Sbjct: 104 PGQSPAEKYDQQHLYHPQ 121


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -2

Query: 582 AGDVTGYIQLPLVPQEYNQWL 520
           A   TG++  P++ Q  + W+
Sbjct: 235 AAQATGFVVWPIIEQRADLWI 255


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -2

Query: 582 AGDVTGYIQLPLVPQEYNQWL 520
           A   TG++  P++ Q  + W+
Sbjct: 235 AAQATGFVVWPIIEQRADLWI 255


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,397
Number of Sequences: 336
Number of extensions: 3360
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)