Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30284
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0469 + 3638493-3641166,3641286-3641653                           32   0.53 
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632...    30   2.1  
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283...    29   2.8  

>11_01_0469 + 3638493-3641166,3641286-3641653
          Length = 1013

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -2

Query: 321 GRCSNSIQI*VNSYAIEKLKNSFKHTAPRSQGEKNRSSVVSIDANQRVFH 172
           GR  +S+    N Y +E   N+F    PR+ GE N+  +++++ NQ   H
Sbjct: 277 GRIPSSLTNASNLYFLELSNNNFTGLVPRTIGELNKLQMLNLEWNQLQAH 326


>06_03_0640 - 23059473-23060489,23060592-23060651,23063163-23063283,
            23063476-23065496
          Length = 1072

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 566  PVTSPAPTHVLMHFHHPQHEHYVPTYRRI 652
            P+  P P H  MH +H QH+     Y+ I
Sbjct: 953  PLPPPGPVHQQMHAYHQQHQQQQQHYQSI 981


>10_01_0267 -
           2828966-2829340,2831164-2831629,2833390-2833487,
           2833782-2834078,2834287-2834694
          Length = 547

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = +2

Query: 566 PVTSPAPTHVLMHF---HHPQHEHY 631
           PV SPAP    MHF   HH  H H+
Sbjct: 519 PVPSPAPAPAPMHFVLGHHHHHRHH 543


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,539,450
Number of Sequences: 37544
Number of extensions: 342287
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)