Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30284
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   2.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   2.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.1  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 74  KGFNSFYKSSSRYYNLIS 21
           K +N+ Y S   YYN+I+
Sbjct: 312 KNYNNNYNSKKLYYNIIN 329


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 74  KGFNSFYKSSSRYYNLIS 21
           K +N+ Y S   YYN+I+
Sbjct: 323 KNYNNNYNSKKLYYNIIN 340


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 244 SVLKRVF*LLDRVRVNSNLYGVGTAPGTAANIS 342
           S+L  V  +LDR+R + N+ G G   G   ++S
Sbjct: 464 SLLFAVDWMLDRIRTSINVLGDGYGAGIVYHLS 496


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -3

Query: 632 HNVRAVDDENALTREWGRVTSQVTFNYRW 546
           H+++  D+ NA  ++WG V   +   + W
Sbjct: 463 HHIQRQDEFNAEDQDWGFVAMVLDRLFLW 491


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,263
Number of Sequences: 438
Number of extensions: 4181
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)