Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30284
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31490.1 68415.m03846 expressed protein                             29   4.1  
At5g51800.1 68418.m06423 expressed protein                             28   7.2  
At4g31920.1 68417.m04535 two-component responsive regulator fami...    27   9.5  

>At2g31490.1 68415.m03846 expressed protein
          Length = 71

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 611 DENALTREWGRVTSQVTFNYRWYRRN 534
           ++N    +WG     +  N+RW RRN
Sbjct: 8   NKNKFIEDWGSARENLEHNFRWTRRN 33


>At5g51800.1 68418.m06423 expressed protein
          Length = 972

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 581 APTHVLMHFHHPQHEHYVPT 640
           AP   L+H HH  H+ ++PT
Sbjct: 29  APNPSLLHHHHHHHQSFLPT 48


>At4g31920.1 68417.m04535 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 552

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -2

Query: 276 IEKLKNSFKHTAPRSQGEKNRSSVVSIDAN 187
           IE+LKN ++H   +S+ +KN+S+V +   N
Sbjct: 122 IEELKNIWQHVVRKSKLKKNKSNVSNGSGN 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,524,605
Number of Sequences: 28952
Number of extensions: 285581
Number of successful extensions: 587
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)