Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30283
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   4.2  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   5.6  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   7.4  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 180 PHSAGLTPYSGHGRHHQN 233
           P S G++PY+    HH +
Sbjct: 40  PLSLGMSPYASSQHHHHH 57


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +1

Query: 256 QPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 429
           Q KM N       +S  +   +  P K VI++ R L P     ++L  N      KRK
Sbjct: 15  QNKMYNVIQHSPQQSIIVSGSITQPTKTVIQSKRPLAPAPERTSVLVTNNSDLRCKRK 72


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -2

Query: 501 QLQSTLLGISKSLQVLPSAQL*DSFPLQHGRVRIEFQHR 385
           +L+     +SK + +   ++L ++  L   +++I FQ+R
Sbjct: 170 ELEKEFTFVSKYITIKRKSELAENLGLSERQIKIWFQNR 208


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,020
Number of Sequences: 336
Number of extensions: 2482
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)