Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30283
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 97 9e-21
07_01_0578 + 4295386-4296489,4297394-4297507 97 1e-20
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 30 1.5
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 29 3.6
08_02_1476 - 27372288-27372310,27372508-27372586,27372818-273730... 28 8.3
03_03_0125 - 14630078-14630136,14630197-14631160 28 8.3
03_03_0122 - 14617879-14618871 28 8.3
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 28 8.3
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 97.5 bits (232), Expect = 9e-21
Identities = 52/115 (45%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Frame = +2
Query: 2 MRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQ 178
MRNRR I RKGPLI++ + + +AFRN+PGV+ APGGHLGRFVIWT+
Sbjct: 199 MRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTE 258
Query: 179 SAFGRLDPLFGSWKTPSKQKKNFNLPNRRWPTLTSHVFSSLMRSG--RSSVLPTN 337
AF +LD ++G + TP+ +KK F LP P + + S L+ S +S V P N
Sbjct: 259 CAFKKLDEVYGGFDTPALKKKGFVLPR---PKMANADLSRLINSDEVQSVVKPIN 310
Score = 62.9 bits (146), Expect = 2e-10
Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = +1
Query: 226 IKTKEELQPAQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 405
+K K + P +PKMAN DL+RL+ SDE++ V++ NK V + NPL N A+LKLNP
Sbjct: 276 LKKKGFVLP-RPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNP 334
Query: 406 YAAVLKRKAIL-ELRRRKNLKALADAEKSGL 495
Y ++ A L E R K D++++ L
Sbjct: 335 YFGTARKMAALAEAARVKARTEKLDSKRTKL 365
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/86 (51%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 MRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQ 178
MRNRR I RKGPLI++ + + +AFRN+PGV+ APGGHLGRFVIWT+
Sbjct: 200 MRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTE 259
Query: 179 SAFGRLDPLFGSWKTPSKQKKNFNLP 256
SAF +L+ ++G+++ PS +KK F LP
Sbjct: 260 SAFKKLEEVYGTFEAPSLKKKGFILP 285
Score = 68.1 bits (159), Expect = 6e-12
Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = +1
Query: 223 TIKTKEELQPAQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLN 402
++K K + P +PKMAN DL R++ SDE++ V++ NK V R ++ NPL N A+LKLN
Sbjct: 276 SLKKKGFILP-RPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLN 334
Query: 403 PYAAVLKRKAIL-ELRRRKNLKALADAEKSGL 495
PY ++ A L E R K K D++++ L
Sbjct: 335 PYFGTARKMATLAEAARIKARKEKLDSKRTKL 366
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 202 GVKPAECGLSPDDETSKMASRSQLQEVQLVNIQELHTGDVA 80
G+ A G++ DD+ K ASR L + ++N+ +GD A
Sbjct: 147 GLSCARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAA 187
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 137 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 253
APG G GR+V+ SA LDP F SW S++ K F++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHI 709
>08_02_1476 -
27372288-27372310,27372508-27372586,27372818-27373085,
27373346-27373410,27373611-27373757
Length = 193
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 168 MTKRPRWPPGASFRRFSLLTFRSSTPGMLRK 76
M RP WP AS R S+ R PG R+
Sbjct: 1 MAARPSWPSTASCRSRSVAYLRQQPPGHRRR 31
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 155 GRFVIWTQSAFGRL-DPLFGSWK 220
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 155 GRFVIWTQSAFGRL-DPLFGSWK 220
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 187 ECGLSPDDETSKMASRSQLQEVQ 119
+CG+ PD+ S++ S+ QEV+
Sbjct: 51 DCGMDPDEAVSRLLSQDTFQEVK 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,426,185
Number of Sequences: 37544
Number of extensions: 334563
Number of successful extensions: 917
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -