Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30283
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                72   5e-13
SB_18738| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_48008| Best HMM Match : M (HMM E-Value=0.0068)                      31   1.2  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)                     28   8.4  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 32/53 (60%), Positives = 36/53 (67%)
 Frame = +2

Query: 2   MRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGR 160
           MRNRR + RKGPLII+N DQGL +AFRN+PGVE             PGGHLGR
Sbjct: 193 MRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVELQHVDRLNLLKLCPGGHLGR 245



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 24/49 (48%), Positives = 29/49 (59%)
 Frame = +1

Query: 346 RATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSG 492
           RA  K NPL N   ML+LNPYA   KR  +L + RR+  K  A A+K G
Sbjct: 250 RAIHKKNPLKNLGTMLRLNPYAKSAKRAEMLTVERRRAAKEAALAKKRG 298


>SB_18738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 21/84 (25%), Positives = 42/84 (50%)
 Frame = +1

Query: 202 LIRVMEDTIKTKEELQPAQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNN 381
           +I+   D I   ++  P++P++  + L  L   D I +    PNK    +T + NP+   
Sbjct: 120 IIKFFGDIIAFLKQPNPSKPELVCSSLLSL--QDAINRAAVEPNKT---STTE-NPIERQ 173

Query: 382 KAMLKLNPYAAVLKRKAILELRRR 453
             ++K  PY  +L++    EL+++
Sbjct: 174 SFLVKNRPYFTMLRKSYDKELKKK 197


>SB_48008| Best HMM Match : M (HMM E-Value=0.0068)
          Length = 1068

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +1

Query: 145 RPSWTFRHLDSVRIRQA*PLIRVMEDTIKTKEELQPAQPKMANTDLTRLLKSDE 306
           RP +   H D  R  +   LIRV E    + ++ QP Q K    DLTR L   E
Sbjct: 664 RPQYRLMHCDERRYIRFDVLIRVDEGVTVSNKQSQPPQ-KKTQVDLTRELNERE 716


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +1

Query: 295 KSDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 399
           +SD I K+    NK++   ++    L+ LTNNKA LKL
Sbjct: 27  QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64


>SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 964

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 178 LSPDDETSKMASRSQLQEVQLVNIQELHTGDVAEGASQTLILVED 44
           L+ D+E   +   + L++V + +   + T  VA G S TL+L+++
Sbjct: 557 LALDNEDGPVEEVAVLRQVSVPDFNSVGTSSVAMGTSHTLVLLQN 601


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,138,075
Number of Sequences: 59808
Number of extensions: 352019
Number of successful extensions: 966
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)