Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30283
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    89   2e-18
L15201-5|AAA27943.2|  219|Caenorhabditis elegans Egg laying defe...    29   4.3  
Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.    28   5.6  
Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical p...    28   5.6  
AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical ...    28   5.6  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
 Frame = +2

Query: 2   MRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQS 181
           +RNR+  Q+ GP++I+ +D    RAFRNIPGV+            APGGHLGR +IWT+S
Sbjct: 195 LRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTES 254

Query: 182 AFGRLDPLFGSWKTPSKQ-KKNFNLPNRRWPTLTSHVFSSLMRS 310
           AF +LD ++G+    S Q KK +++P    P + +  FS ++RS
Sbjct: 255 AFKKLDTIYGTTVANSSQLKKGWSVP---LPIMANSDFSRIIRS 295



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 23/64 (35%), Positives = 41/64 (64%)
 Frame = +1

Query: 259 PKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL 438
           P MAN+D +R+++S+E+ K +RAP K  +      NPL     + KLNPYA++L++ +  
Sbjct: 282 PIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYASILRKASKA 341

Query: 439 ELRR 450
            +++
Sbjct: 342 NVKK 345


>L15201-5|AAA27943.2|  219|Caenorhabditis elegans Egg laying
           defective protein 5,isoform a protein.
          Length = 219

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +3

Query: 318 PPCSQQTRDPCYTQIEPTH**QGDAETQSLRGRAEEESYLRAAQKEELEGSC*CREEWIE 497
           P C   T  P Y   +         +T  L  + ++ SY+   Q+EEL       +  I+
Sbjct: 94  PQCYPNTAWPNYASSKKGRQTYQRYQTSVLEAKFQQSSYVSKKQREELRLQTQLTDRQIK 153

Query: 498 AV*ANPAMKAEKLRER 545
               N  MKA+K ++R
Sbjct: 154 IWFQNRRMKAKKEKQR 169


>Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 274 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 429
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 274 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 429
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 274 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 429
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,976,629
Number of Sequences: 27780
Number of extensions: 253292
Number of successful extensions: 690
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)