Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30283
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   100   1e-21
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    99   2e-21
At1g53510.1 68414.m06068 mitogen-activated protein kinase, putat...    32   0.42 
At5g21940.1 68418.m02547 expressed protein supported by full len...    29   2.3  
At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box fami...    28   6.9  
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil...    28   6.9  
At3g47740.1 68416.m05201 ABC transporter family protein ATP bind...    27   9.1  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  100 bits (239), Expect = 1e-21
 Identities = 45/89 (50%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
 Frame = +2

Query: 2   MRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQ 178
           MRNRR I RKGPL++F  +   + +AFRN+PGVE            APGGHLGRFVIWT+
Sbjct: 202 MRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTK 261

Query: 179 SAFGRLDPLFGSWKTPSKQKKNFNLPNRR 265
           SAF +L+ ++GS++ PS++KK + LP  +
Sbjct: 262 SAFEKLESIYGSFEKPSEKKKGYVLPRAK 290



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 29/68 (42%), Positives = 36/68 (52%)
 Frame = +1

Query: 262 KMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILE 441
           KM N DL R++ SDE++ V+        RA  K NPL N   M KLNPYA   KR ++L 
Sbjct: 290 KMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLA 349

Query: 442 LRRRKNLK 465
              R   K
Sbjct: 350 EASRVKAK 357


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 44/89 (49%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
 Frame = +2

Query: 2   MRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQ 178
           MRNRR I RKGPL+++  +   + +AFRN+PGVE            APGGHLGRFVIWT+
Sbjct: 201 MRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTK 260

Query: 179 SAFGRLDPLFGSWKTPSKQKKNFNLPNRR 265
           SAF +L+ ++GS++ PS++KK + LP  +
Sbjct: 261 SAFEKLESIYGSFEKPSEKKKGYVLPRAK 289



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 34/75 (45%), Positives = 42/75 (56%)
 Frame = +1

Query: 262 KMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILE 441
           KM N DL R++ SDEI+ V+    K   RA  K NPL N   MLKLNPYA   KR ++L 
Sbjct: 289 KMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLA 348

Query: 442 LRRRKNLKALADAEK 486
             +R   K    A+K
Sbjct: 349 EAQRVKAKKEKLAKK 363


>At1g53510.1 68414.m06068 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK18) mitogen-activated protein
           kinase (MAPK)(AtMPK18), PMID:12119167
          Length = 603

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +1

Query: 274 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYA-AVLKRKAILELRR 450
           TDL    KS+ I  V     ++ +   RK NP+T ++   K +P A  +L+R    + + 
Sbjct: 232 TDLLGTPKSETISGVRNDKARKYLTEMRKKNPVTFSQKFSKADPLALRLLQRLLAFDPKD 291

Query: 451 RKN-LKALADAEKSGLKLSKQTP 516
           R    +ALAD    GL   ++ P
Sbjct: 292 RPTPAEALADPYFKGLSKIEREP 314


>At5g21940.1 68418.m02547 expressed protein supported by full length
           cDNA GI:22531282 from [Arabidopsis thaliana]
          Length = 264

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +3

Query: 162 SSSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPTEDGQH*PHTSSQ 296
           SS G SP ++G  P   H   HQ K+     P   G     TSSQ
Sbjct: 188 SSPGSSPTTSGSPPRQLHHHQHQMKKLPPLYPRSQGSFGNLTSSQ 232


>At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box family
           protein (FBX1) E3 ubiquitin ligase SCF complex F-box
           subunit; almost identical to unusual floral organs
           (UFO)GI:4376159 from [Arabidopsis thaliana]
           Landsberg-erecta; one amino acid difference
          Length = 442

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 660 RPFQLSASYLPSSWEEAGSS*QPASWVS 577
           R ++LS +Y+PS +  +GSS    SWVS
Sbjct: 138 RWYRLSFAYIPSGFYPSGSSGGLVSWVS 165


>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
           to U2 small nuclear ribonucleoprotein auxiliary factor
           35 kD subunit related protein 1 (sp|Q15695)
          Length = 757

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 26/91 (28%), Positives = 43/91 (47%)
 Frame = +1

Query: 217 EDTIKTKEELQPAQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLK 396
           E+    KE  + ++ K A  +++R  K   ++K+ R   ++ I A  +       +A  K
Sbjct: 14  EEAAGEKESFEESKEKAA--EMSRKEKRKAMKKLKRKQVRKEIAAKER------EEAKAK 65

Query: 397 LNPYAAVLKRKAILELRRRKNLKALADAEKS 489
           LN  A   + KAI E   R+  K L D E+S
Sbjct: 66  LNDPAEQERLKAIEEEDARRREKELKDFEES 96


>At3g47740.1 68416.m05201 ABC transporter family protein ATP binding
           cassette transporter ABC1, Homo sapiens, PIR2:A54774
          Length = 947

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -3

Query: 476 SARAFKFFLLRSSKIAFLFSTAA*GLSFSIALLLVSGFN 360
           S    KFFLL    + F F      L  SIA LL S F+
Sbjct: 423 SVIGLKFFLLNDFSLQFSFYFVYINLQISIAFLLSSAFS 461


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,707,106
Number of Sequences: 28952
Number of extensions: 248766
Number of successful extensions: 686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)