Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30282
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   151   7e-38
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   149   4e-37
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.49 
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   3.5  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   4.6  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   4.6  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    26   6.1  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    26   6.1  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    25   8.0  
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    25   8.0  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.0  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   8.0  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  151 bits (367), Expect = 7e-38
 Identities = 80/150 (53%), Positives = 103/150 (68%), Gaps = 2/150 (1%)
 Frame = +1

Query: 256 LSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLL 429
           LSVAYKNV+GARR+SWR++SSIEQK E  G+  + ++ KEYR K+E+EL  IC D+L +L
Sbjct: 47  LSVAYKNVIGARRASWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVL 106

Query: 430 DKHLIPKASNPESKVFYLKMKGDYYRSLQKWPQEKPDILL*RIHRKHTKMLLKSARRKCS 609
           +KHLIP A++ ESKVFY KMKGDYYR L ++   +          +  K   + A  + +
Sbjct: 107 EKHLIPNAASAESKVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELA 166

Query: 610 PHTP*GWVWALNFSVFYYEILNSPDKACQL 699
           P  P     ALNFSVFYYEILNSPD+AC L
Sbjct: 167 PTHPIRLGLALNFSVFYYEILNSPDRACYL 196



 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 23/43 (53%), Positives = 28/43 (65%)
 Frame = +2

Query: 125 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERN 253
           +  +E+ V  AKLAEQAERY+ M   MK V  T  EL+ EERN
Sbjct: 3   TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERN 45


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  149 bits (361), Expect = 4e-37
 Identities = 80/150 (53%), Positives = 100/150 (66%), Gaps = 2/150 (1%)
 Frame = +1

Query: 256 LSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLL 429
           LSVAYKN++GARR+SWR+ISSIEQK E  G+ R+  + KEYR K+E EL +IC+DVL +L
Sbjct: 46  LSVAYKNIIGARRASWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVL 105

Query: 430 DKHLIPKASNPESKVFYLKMKGDYYRSLQKWPQEKPDILL*RIHRKHTKMLLKSARRKCS 609
           +KHLIP A+  ESKVFY KMKGDYYR L ++   +          +  K     A  +  
Sbjct: 106 EKHLIPAATTGESKVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELP 165

Query: 610 PHTP*GWVWALNFSVFYYEILNSPDKACQL 699
           P  P     ALNFSVFYYEIL+SP+ AC L
Sbjct: 166 PTDPMRLGLALNFSVFYYEILDSPESACHL 195



 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 24/44 (54%), Positives = 30/44 (68%)
 Frame = +2

Query: 122 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERN 253
           MS  +E  V  AKLAEQAERY++M   MK+V  +  +LS EERN
Sbjct: 1   MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERN 44


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
 Frame = +1

Query: 211 SDGNRRRT*QRGEEPLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEK 390
           SD +  R    G + ++  +  +   R+    V+SS  +  E S  +  +    R   E 
Sbjct: 236 SDSDTERQSDSGSKNVARQFSRIKRKRK----VLSSSSEDDESSSPEDLLKPIIRSTEEM 291

Query: 391 E-LREICYDVLGL--LDKHL---IPKASNPESKVFYLK---MKGDYYRSLQKWPQEKPDI 543
           E L E+  +V  L  +D+     +P+  NP  K FY K   ++   Y  L+    EK D 
Sbjct: 292 ENLNELEQEVQDLDPIDEGFEEKVPRFRNPSKKAFYEKLHSLRNRSYSKLESLTSEKSDT 351

Query: 544 LL 549
           L+
Sbjct: 352 LI 353


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 271 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 387
           KN+     S+ R +SS + K   +E +  M  +Y  K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 325 QKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 450
           +K    +    + KEY  K +++LR+   D+  LL KH I +
Sbjct: 328 EKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -3

Query: 154 TLHQFFLVDGHRGRWKRTNSLMPELLKPAVLE 59
           TL   FL DG   RWK        +  P V+E
Sbjct: 52  TLKDEFLADGLESRWKTNGEKSSSIRYPLVME 83


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 259 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 393
           S +Y  + G   S W+ I  ++ K+ G +R    ++ Y    +KE
Sbjct: 61  SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 33  EIKKK*CLHSKTAGFNNSGISELVLFHRPRCPSTRKNWCNVPNWPNKLSDM 185
           ++K+   + S    F N   S+ + F +PR     K   N   WPN+ S +
Sbjct: 50  QLKELDLVVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNETSHL 100


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +1

Query: 259 SVAYKNVVGARRSSWRVISSIEQKTEGSE---RKQQMAKEYRVKVEKELR 399
           SV+ +    +R  S+   S  E + E SE   R+Q++ +E R + EK+LR
Sbjct: 358 SVSSEERSRSRAGSFSHHSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407


>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 322 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM-KGD 498
           E      E+ Q++A+ Y+V  + +LRE  YD LG +    +P A   ++  F+  +  GD
Sbjct: 43  ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99

Query: 499 YYR 507
            +R
Sbjct: 100 SFR 102


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 614 CGLHFRLADFKSILVCFL*ILYNRMSGFSCGHFC 513
           C L+F L + K+ L+    I+Y  + GFS  H C
Sbjct: 46  CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 343 ERKQQMAKEYRVKVEKELREICYDV--LGLLDKHLIPKASNPE 465
           E++Q  A +YR+KVE+   +I   V  +  L+  L  + SNPE
Sbjct: 85  EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,992
Number of Sequences: 5004
Number of extensions: 60348
Number of successful extensions: 200
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)