Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30282
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 2e-34
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0) 117 1e-26
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.) 106 2e-23
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44) 89 2e-18
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_41987| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_45140| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32) 29 4.9
SB_33946| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_19000| Best HMM Match : Ery_res_leader2 (HMM E-Value=0.69) 28 6.5
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 28 6.5
SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_17698| Best HMM Match : Neuromodulin (HMM E-Value=2.8) 28 8.5
>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 142 bits (345), Expect = 2e-34
Identities = 78/150 (52%), Positives = 93/150 (62%), Gaps = 2/150 (1%)
Frame = +1
Query: 256 LSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDK 435
LSVAYKNVVGA+RSSWRVISSIEQK EGSERK+Q + YR +E EL E+C VL LL+
Sbjct: 23 LSVAYKNVVGAKRSSWRVISSIEQKLEGSERKKQNTETYRQTIENELNEVCETVLKLLES 82
Query: 436 HLIPKASNPESKVFYLKMKGDYYR--SLQKWPQEKPDILL*RIHRKHTKMLLKSARRKCS 609
LIP A + ESKVFYLKMKGDYYR + +++ + + K
Sbjct: 83 KLIPNAQSTESKVFYLKMKGDYYRYEGEVAGADRRREVVQKAMKAYSEAQEIAEKDPKLP 142
Query: 610 PHTP*GWVWALNFSVFYYEILNSPDKACQL 699
P P ALNFSVFYYEI+ +AC L
Sbjct: 143 PTDPIRLGLALNFSVFYYEIVEDSKQACDL 172
Score = 35.5 bits (78), Expect = 0.043
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +1
Query: 565 KHTKMLLKSARRKCSPHTP*GWVWALNFSVFYYEILNSPDKACQL 699
K K ++ K +P P ALNFSVF+YEI + ++AC+L
Sbjct: 217 KEAKEAAETGDGKLAPTDPIRLGLALNFSVFHYEIQENQEEACKL 261
>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
Length = 248
Score = 117 bits (281), Expect = 1e-26
Identities = 72/152 (47%), Positives = 91/152 (59%), Gaps = 4/152 (2%)
Frame = +1
Query: 256 LSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDK 435
LSVAYKNVVGARRSSWRVISS+EQK E + K+YR + EL C +VL +L+
Sbjct: 52 LSVAYKNVVGARRSSWRVISSMEQK--APEEMAALTKKYREDITNELNGKCAEVLDILEN 109
Query: 436 HLIPKAS---NPESKVFYLKMKGDYYRSLQKWPQEKPDILL*RIHRKHTKMLLKSAR-RK 603
+L+ N E+KVFYLKM+GDY+R L + + D I + SA+ +
Sbjct: 110 YLLKDGQDDINTEAKVFYLKMRGDYHRYLVE--VAEGDSRKENIEKSREAYKDASAKAEE 167
Query: 604 CSPHTP*GWVWALNFSVFYYEILNSPDKACQL 699
SP P ALNFSVFYYEI N P +AC+L
Sbjct: 168 LSPSHPIRLGLALNFSVFYYEIENKPPEACKL 199
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +2
Query: 110 PSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERN 253
P+ +EEL+ AK+AEQAERYDDM AM VT+ G L++EERN
Sbjct: 3 PNFVSKCSREELIHLAKMAEQAERYDDMVNAMSAVTKEGKPLNDEERN 50
>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 106 bits (255), Expect = 2e-23
Identities = 51/89 (57%), Positives = 70/89 (78%)
Frame = +1
Query: 256 LSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDK 435
LSV+YKN+VG RRSSWRVISSIE+KT S + K+Y+ +EKEL+++C +VLG+L++
Sbjct: 125 LSVSYKNIVGQRRSSWRVISSIEEKTAESS-SLAIVKKYKACIEKELKDLCKEVLGILER 183
Query: 436 HLIPKASNPESKVFYLKMKGDYYRSLQKW 522
LIP A + E+KVFY K+KGDYYR L ++
Sbjct: 184 -LIPGAEDEENKVFYFKLKGDYYRYLAEF 211
Score = 52.0 bits (119), Expect = 5e-07
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +2
Query: 122 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERN 253
M V +E L+ AKL+EQ +RYD+MA MKEV+E +LS EERN
Sbjct: 80 MMVVRETLIYNAKLSEQCDRYDEMAKIMKEVSEKYPKLSKEERN 123
>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
Length = 251
Score = 89.4 bits (212), Expect = 2e-18
Identities = 45/81 (55%), Positives = 60/81 (74%), Gaps = 3/81 (3%)
Frame = +1
Query: 256 LSVAYKNVVGARRSSWRVISSIEQKTE--GSE-RKQQMAKEYRVKVEKELREICYDVLGL 426
LSVAYKNV+GARR+SWR+I+SIEQK E G + K +M + YR +E+EL+ IC ++L L
Sbjct: 45 LSVAYKNVIGARRASWRIITSIEQKEESKGEDMAKLEMIRNYRKTIEEELKTICGEILSL 104
Query: 427 LDKHLIPKASNPESKVFYLKM 489
LD LI + + ESKVFY K+
Sbjct: 105 LDDSLIKNSQSEESKVFYNKI 125
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/41 (70%), Positives = 32/41 (78%)
Frame = +2
Query: 131 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERN 253
DKEE V AKLAEQAERYDDM +MKEV + G ELS E+RN
Sbjct: 3 DKEEHVYMAKLAEQAERYDDMVNSMKEVAKMGTELSTEDRN 43
>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/44 (47%), Positives = 27/44 (61%)
Frame = +2
Query: 122 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERN 253
M + ELVQ AKLAEQ ER++D+ MK+ E L+ E RN
Sbjct: 186 MQDSRNELVQLAKLAEQTERFEDVILYMKKAIEINPSLNKEHRN 229
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +1
Query: 256 LSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAK--EYRVKVEKELREICYDVL 420
LSV YKNVVG++R +WR + ++ R Q+ +Y+ K+E EL+ +C ++L
Sbjct: 231 LSVGYKNVVGSKRFAWRHLHHDALQSGRYIRDSQLKGIIKYKEKIEMELKTLCREIL 287
>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 994
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 98 ISPLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEER 250
+SPLPS+ +E+V KLAE+ E ++++ T+ E + EE+
Sbjct: 643 VSPLPSTATEDQMQEVVDSNKLAEKKEVTEEVSPVKPLSTKESKENALEEK 693
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Frame = +1
Query: 253 PLSVAYKNVVGAR------RSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYD 414
PLS K VV + + W ++S E+ +ER++Q E +VK E++ R+ +
Sbjct: 319 PLSTPAKQVVKTKWDRIREKHQWNLLSEDEKNKIKAERRKQKRLELKVKREEKERKRLEE 378
Query: 415 VLGLLDKHLIPKASN 459
+ + HL K SN
Sbjct: 379 LKRVSFAHLGMKLSN 393
>SB_41987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +1
Query: 328 KTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDK--HLIPKASNPESKVFYLKMKGDY 501
KT+G + + ++ +++ KE R + + L LDK + + + P+++++ L +Y
Sbjct: 18 KTKGKKALRSISDNETLELAKEFRALFQERLRGLDKKSYHTSEQNKPDTELYVLACFAEY 77
Query: 502 YRS---LQKWPQEKP 537
+ S + K QEKP
Sbjct: 78 FPSKYRVTKCSQEKP 92
>SB_45140| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
Length = 868
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -1
Query: 576 LGMLSVNPLQQNVWFLLWPLLQGPVVI--SFHFEVKHFTFWI 457
L +LS +P++ W+L W + + ++ +FE+KH + +
Sbjct: 781 LKLLSEDPIEVQYWYLEWTICKTRNIMLRDLNFEIKHIDYML 822
>SB_33946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 409 YDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRSLQ 516
YD ++ HL+P A +++ +K+ DYY L+
Sbjct: 6 YDSNTVVSHHLLPSAQTRYIRIYPVKVNSDYYGGLR 41
>SB_19000| Best HMM Match : Ery_res_leader2 (HMM E-Value=0.69)
Length = 310
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 501 LQVLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHP 620
L +LA G+ RH + A QDA I A+++PT P
Sbjct: 264 LMLLASYTAGDMRHDLDLRLPAANQDACYILHARIRPTPP 303
>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1126
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 304 RVISSIEQKTEGSERKQQMAKEYRVKVEKELREIC 408
R++ IE+K E E ++ AKE + + E+E + IC
Sbjct: 919 RIMKEIEEK-EKKEEAERKAKEEKEREERERKRIC 952
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 349 KQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 450
K++M ++Y K+EKE+ Y+++ L K ++ K
Sbjct: 292 KEEMKEKYDGKIEKEMSGAIYEIISRLMKAVVGK 325
>SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1553
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Frame = +1
Query: 283 GARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNP 462
G ++ R + +E+K S+++Q + + + E EI + L++ + +
Sbjct: 751 GIYKTRLREMEDVEEKRNESQKQQLQSLQKYINELSEQNEILVQTVEELEREANERVALV 810
Query: 463 ESKVFYLKMK--------GDYYRSLQKWPQEKPDI 543
ESK+ DY R L+K QEK +I
Sbjct: 811 ESKLNRTNTSLKDTSIKVSDYERQLEKVKQEKQEI 845
>SB_17698| Best HMM Match : Neuromodulin (HMM E-Value=2.8)
Length = 436
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 104 PLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNPF 259
P PS+ + D EEL+ + + E + D + K +T E +N N +
Sbjct: 213 PEPSTEVIPDSEELLDKEQFTEARDSPDYLTDGSKSITPIPREEANSSDNEY 264
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,341,064
Number of Sequences: 59808
Number of extensions: 448747
Number of successful extensions: 1223
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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