Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30281
         (747 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    27   0.16 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    24   1.1  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    24   1.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.5  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   4.5  

>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 1   VMWRVAGASVSYLTDDLRRRQLAYITALSGKTERESRWKE 120
           ++W + G        DL RR++A +  L+ K E + R  E
Sbjct: 252 ILWHIVGTFSGIFLCDLIRREIANVQVLAYKIEAKRRDNE 291


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +1

Query: 220 VNDIRQQFRKTLPRWT 267
           ++DI Q+++ TLPR+T
Sbjct: 406 IDDIFQEYKATLPRYT 421


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +1

Query: 220 VNDIRQQFRKTLPRWT 267
           ++D+ Q+F+ TLPR+T
Sbjct: 406 IDDMFQEFKATLPRYT 421


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +1

Query: 181 YFNENSKANALEMVNDIRQQFRKTLPRWTG 270
           +F+E+   N    +  I  Q ++ +P W G
Sbjct: 512 FFDEDQDRNLASDLAKILSQAKQEIPEWLG 541


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 488 LGHPRSPAIVNAFYSSIENSIQFPAGILQGAFFS 589
           L +PRS  +  A Y S + +     G+   AF+S
Sbjct: 1   LQYPRSVGVYGAPYPSTDQNPYPSIGVESSAFYS 34


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,829
Number of Sequences: 336
Number of extensions: 4142
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)