Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30281
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    29   0.53 
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            27   3.8  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   3.8  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   6.6  
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...    26   6.6  
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.6  
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    25   8.7  

>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 23/84 (27%), Positives = 36/84 (42%)
 Frame = +3

Query: 252 STKVDWMDDMTRQEALEKADAMASHIAYPSEMLDNNRLTEFYSGLEMSSEHLMESVLNLT 431
           ST   W+ D  ++   +   + A     PS   +N    E +    +S E L  SV NLT
Sbjct: 400 STFRSWLFDPKQKHTADTLSSSAIRPRTPSPSAENYLTQENFDSDNLS-ESLDNSVENLT 458

Query: 432 LFTTEYLFGKLREPVNKTDWVTHG 503
           +F +   FG+    + +T  V  G
Sbjct: 459 VFPSINSFGRRHSNLPQTTHVDTG 482


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 56  DDNW-PTSQLCQEKLNARVDGKNAPI 130
           D+NW  TS++ +EK +  V+GK  P+
Sbjct: 133 DENWFTTSEVTEEKKSNVVEGKQEPV 158


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -3

Query: 544 VLNRRIESVDDSGRPWVTQSVLLTGSLSLPNKYSVVNNVKLSTDSIKCSDD 392
           V N++ ES D S    +  + LL    SLP   S+ N+V L     + SDD
Sbjct: 3   VSNQKAESDDGSD---IDDAALLQKINSLPIDQSITNSVSLEKHDFQGSDD 50


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 106 SRWKECADTTSASMSIAVGALYIRKYFNENSKA-NALEMVNDIRQQFR 246
           S W++  +  +      V  L+++KYF E+ KA N L +++++R   R
Sbjct: 655 SSWEKGDNFVTKKNVCTVMNLWVQKYFFEDLKARNTLYLISEMRTFLR 702


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 649 DFMSNDETNSTVIHVSRTFGREECSL 572
           DF+S D T S  I  SRTF  E  +L
Sbjct: 73  DFVSGDGTGSATIFNSRTFPDENFTL 98


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
 Frame = -3

Query: 565 TSRKLYAV--LNRRIESVDDSGRPWVTQSVL-----LTGSLSLPNKYSVVNNVKLS 419
           ++R++YA+  + + +   DD+  P +  + +     +   LSLPNK +V  N+KLS
Sbjct: 131 STRQVYAIAHVGKDVGLDDDTIHPGLIATCMDEVLAICSFLSLPNKIAVTANLKLS 186


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 725 GHFLPPVHKVSVFIELPAPGHQNRA*FH 642
           G  L P+HK++ F E    GH+  A  H
Sbjct: 9   GSLLEPLHKLNPFSENSTSGHRKNASDH 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,526
Number of Sequences: 5004
Number of extensions: 68824
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)