Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30281
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426...    33   0.32 
09_02_0504 - 10013784-10014041,10014558-10014660,10014932-100150...    29   5.2  
08_01_0331 + 2966362-2966477,2966561-2966924,2966949-2967050,296...    28   9.1  
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568...    28   9.1  

>06_01_0591 +
           4261483-4261631,4261837-4262007,4262127-4262226,
           4263151-4263315,4263416-4263544,4263758-4263858,
           4264527-4264596,4265080-4265331,4265828-4265897,
           4266281-4266341,4266916-4267003,4267746-4267830,
           4268168-4268234,4268442-4268559,4268843-4268923,
           4269022-4269267,4269670-4269771,4269847-4269914,
           4270040-4270171,4270283-4270430,4270504-4270790,
           4270920-4271067,4271156-4271331,4271407-4271518,
           4271614-4271667,4273134-4273244,4273317-4273478,
           4273627-4273814,4273948-4274137,4274297-4274464,
           4274832-4274912
          Length = 1359

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +3

Query: 327 IAYPSEMLDNNRLTEFYSGLEMSSEHLME----SVLNLTLFTTEYLFGKLREPVNKTDWV 494
           I+   E+L + R  + YS   + ++ L+E     V +L +FT   LF  L  P+N   WV
Sbjct: 504 ISCAGELLAHIRTVKMYSWERLFTQRLVERRELEVKHLAVFTCVALFNTLIPPLNSFPWV 563

Query: 495 THG 503
            +G
Sbjct: 564 ING 566


>09_02_0504 -
           10013784-10014041,10014558-10014660,10014932-10015093,
           10015416-10015549,10015633-10015716,10015839-10016129,
           10016362-10016694,10016823-10016965,10017273-10017429,
           10017513-10017616,10017728-10017888,10017971-10018287,
           10018396-10018677,10018759-10019226,10019338-10019391,
           10019689-10019742,10019943-10020021,10020108-10020196,
           10021153-10021273,10022321-10022637
          Length = 1236

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 298 WRKLMLWLHTSPTPVKCLTTTDSPNSTLVWKCHR 399
           WR+L L L   P   KC  +  +P++ L W C R
Sbjct: 14  WRRLFLLLQAPP---KCCVSPITPSNGLRWPCKR 44


>08_01_0331 +
           2966362-2966477,2966561-2966924,2966949-2967050,
           2967127-2967209,2967306-2967422,2968085-2968187,
           2968259-2968928,2969239-2969393,2969529-2969580,
           2969734-2969825
          Length = 617

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 4   MWRVAGASVSYLTDDLRRRQLAYITALSGKTERESR-WKECADTTSASMSIA 156
           MWR   A    + + +RR +      L+ KTE  SR   EC       +S+A
Sbjct: 163 MWREKAAEAEVMKESVRREKECVQHLLNAKTEELSRKSSECGRLQEKGLSLA 214


>01_06_1696 +
           39256171-39256393,39256513-39256595,39256692-39256831,
           39256882-39257398,39257518-39257565,39257832-39258006,
           39258122-39258234,39258329-39258425,39258579-39258798,
           39258985-39259144,39259233-39259646
          Length = 729

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +2

Query: 575 GAFFSAKRPAYM----NYGAIGFVIGHEITHG 658
           G + S +RP  +    N GAIG ++ H++ HG
Sbjct: 285 GKYLSRERPGMLFFIFNPGAIGVLVAHDLEHG 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,890,940
Number of Sequences: 37544
Number of extensions: 481183
Number of successful extensions: 1078
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)