Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30281
(747 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24401| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 7e-11
SB_24883| Best HMM Match : Peptidase_M13 (HMM E-Value=6.9e-20) 64 9e-11
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12) 61 8e-10
SB_8202| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0) 58 1e-08
SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_31479| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.60028e... 46 3e-05
SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_45747| Best HMM Match : Peptidase_M13 (HMM E-Value=3.4e-05) 45 6e-05
SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_43754| Best HMM Match : Peptidase_M13 (HMM E-Value=6.9e-07) 41 0.001
SB_43957| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.6e-13) 38 0.007
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17) 36 0.035
SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_6906| Best HMM Match : Peptidase_M13 (HMM E-Value=7.5e-23) 31 1.3
SB_18790| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37) 29 3.0
SB_18789| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5) 29 4.0
SB_46387| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_22477| Best HMM Match : E-MAP-115 (HMM E-Value=0.7) 28 7.0
SB_25208| Best HMM Match : PAN (HMM E-Value=0.019) 28 9.2
>SB_24401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 64.9 bits (151), Expect = 7e-11
Identities = 25/83 (30%), Positives = 49/83 (59%)
Frame = +1
Query: 1 VMWRVAGASVSYLTDDLRRRQLAYITALSGKTERESRWKECADTTSASMSIAVGALYIRK 180
V+W++ +S L+ R+ + + +SG E+E RW+ C T+ ++ + +G LY+RK
Sbjct: 276 VVWQMIRDKISLLSKPFRKARAVFNHKISGVKEQEPRWRTCTSITNDNLGVPLGTLYVRK 335
Query: 181 YFNENSKANALEMVNDIRQQFRK 249
YFNE++ M+ +I+ F++
Sbjct: 336 YFNESTVGKIQLMIQEIKDTFKE 358
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/73 (31%), Positives = 40/73 (54%)
Frame = +3
Query: 264 DWMDDMTRQEALEKADAMASHIAYPSEMLDNNRLTEFYSGLEMSSEHLMESVLNLTLFTT 443
+W+DD T Q +KADA+ S I Y + +L L + + L++ + + +N+ +
Sbjct: 364 EWIDDKTTQYVFQKADALRSKIGYANYVLRPIILKKRFKSLKIGKKTFFSNNVNVDKWVR 423
Query: 444 EYLFGKLREPVNK 482
L GKLR+ V+K
Sbjct: 424 HRLVGKLRKAVDK 436
>SB_24883| Best HMM Match : Peptidase_M13 (HMM E-Value=6.9e-20)
Length = 206
Score = 64.5 bits (150), Expect = 9e-11
Identities = 28/57 (49%), Positives = 36/57 (63%)
Frame = +2
Query: 503 SPAIVNAFYSSIENSIQFPAGILQGAFFSAKRPAYMNYGAIGFVIGHEITHGFDDQG 673
SP +NA Y N + FP ILQ F+ ++ +N+G IG VIGHE+THGFDD G
Sbjct: 55 SPVEINAQYEDSYNRMVFPVAILQPPFYDSRYNGAVNFGGIGSVIGHELTHGFDDSG 111
Score = 29.9 bits (64), Expect = 2.3
Identities = 7/22 (31%), Positives = 17/22 (77%)
Frame = +3
Query: 672 GRQFDKNGNLVDWWQEMTKEKY 737
G+++D G+ V+WW ++T +++
Sbjct: 111 GKRYDSKGSQVEWWTDITSDEF 132
>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
Length = 1206
Score = 61.3 bits (142), Expect = 8e-10
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +3
Query: 258 KVDWMDDMTRQEALEKAD---AMASHIAYPSEMLDNNRLTEFYSGLEMSSEHLMESVLNL 428
++DW+D TR++ EK M YP ++ L ++Y GL++S H + + +N+
Sbjct: 1068 ELDWLDHETREQIYEKVHRERVMLEKFGYPMMCVNETLLNQYYDGLKISKNHFLLNQVNI 1127
Query: 429 TLFTTEYLFGKLREPVNKTD 488
T + T+Y +LREPV+K D
Sbjct: 1128 TEWNTKYRLARLREPVDKED 1147
Score = 35.1 bits (77), Expect = 0.061
Identities = 14/65 (21%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 4 MWRVAGASVSYLTDDLRRRQLAYITALSGKTERESRWKECADTTS--ASMSIAVGALYIR 177
+W + V +L+ R + ++ ++G + SRW++C + + + A GAL+++
Sbjct: 468 IWTLLRNLVPFLSKPFREAEQTFLIRVAGVKKSPSRWQQCTNAANNLDGLVFATGALWVK 527
Query: 178 KYFNE 192
+ F++
Sbjct: 528 EVFDK 532
>SB_8202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 59.3 bits (137), Expect = 3e-09
Identities = 26/78 (33%), Positives = 45/78 (57%)
Frame = +3
Query: 249 DSTKVDWMDDMTRQEALEKADAMASHIAYPSEMLDNNRLTEFYSGLEMSSEHLMESVLNL 428
D VDWMD+ T+ A KA A+ +IAYP +LD+ +LT +Y + + +E +V+++
Sbjct: 12 DFETVDWMDEETKAAAKRKATALTENIAYPDWILDDEKLTGYYQQMSIGNESYFNNVISV 71
Query: 429 TLFTTEYLFGKLREPVNK 482
F+ E +P++K
Sbjct: 72 GCFSNEQRVQDYNQPLDK 89
>SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0)
Length = 876
Score = 57.6 bits (133), Expect = 1e-08
Identities = 27/82 (32%), Positives = 46/82 (56%)
Frame = +1
Query: 1 VMWRVAGASVSYLTDDLRRRQLAYITALSGKTERESRWKECADTTSASMSIAVGALYIRK 180
V+W V VS+L+ R +L Y + G + RWK C T+ + +GA YI+
Sbjct: 548 VVWNVIQDEVSFLSKPYRDVRLRYRERVLGSKGHKKRWKTCVMYTNELVGDVLGAAYIQH 607
Query: 181 YFNENSKANALEMVNDIRQQFR 246
+F+++SK A +M+ ++RQ F+
Sbjct: 608 HFDQHSKNIARDMIKEVRQAFK 629
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = +3
Query: 261 VDWMDDMTRQEALEKADAMASHIAYPSEMLDNNR-LTEF--YSGLEMSSEHLMESVLNLT 431
+ WMD T+ EKAD+M + YP+ + + + F Y G+ M + L + + +
Sbjct: 635 IPWMDKTTKIAVSEKADSMKDEVGYPAYLKGGKKFIKRFKKYKGVTMKNNALFANRIAIL 694
Query: 432 LFTTEYLFGKLREPVNKTDWVTHG 503
+ + KLR+PV+K D ++ G
Sbjct: 695 KMAHKRMLKKLRKPVDKEDSLSFG 718
Score = 38.7 bits (86), Expect = 0.005
Identities = 13/22 (59%), Positives = 20/22 (90%)
Frame = +2
Query: 608 MNYGAIGFVIGHEITHGFDDQG 673
+++GAIG ++GHE+THGFD+ G
Sbjct: 715 LSFGAIGSILGHEMTHGFDNTG 736
>SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1035
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 503 SPAIVNAFYSSIENSIQFPAGILQGAFF-SAKRPAYMNYGAIGFVIGHEITHGFDDQG 673
+P VNA+Y N I G+LQ FF K P +N+G IG V+ HE+ HGFD G
Sbjct: 548 APYNVNAYYRMTRNEINVLGGMLQPPFFYGRKAPIAVNFGGIGSVLAHELIHGFDTWG 605
>SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 48.0 bits (109), Expect = 8e-06
Identities = 23/77 (29%), Positives = 41/77 (53%)
Frame = +3
Query: 261 VDWMDDMTRQEALEKADAMASHIAYPSEMLDNNRLTEFYSGLEMSSEHLMESVLNLTLFT 440
V WMD+ T+ +A EK +++ I YP ++D +L +Y L ++ E E+ LN F
Sbjct: 418 VTWMDEETKTKAQEKMESVLDLIGYPDWIMDVAQLNAYYVNLVITPEMSFENHLNARRFV 477
Query: 441 TEYLFGKLREPVNKTDW 491
+ K + V++ +W
Sbjct: 478 HQQTMEKRGKAVDRKEW 494
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/92 (23%), Positives = 40/92 (43%)
Frame = +1
Query: 1 VMWRVAGASVSYLTDDLRRRQLAYITALSGKTERESRWKECADTTSASMSIAVGALYIRK 180
++W + + L+ R L + G WK C T + A G LY+++
Sbjct: 331 MVWHLIKPLTTELSKPYREAALDLMRVEMGVESGAPTWKSCVTKTDTVLGYATGHLYVKQ 390
Query: 181 YFNENSKANALEMVNDIRQQFRKTLPRWTGWM 276
+ ++ K A +++ I++ F LP T WM
Sbjct: 391 HDGKDVKEKAKQVIQSIKEAFISNLPTVT-WM 421
Score = 34.3 bits (75), Expect = 0.11
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 672 GRQFDKNGNLVDWWQEMTKEKY 737
GR FDKNGNL WW+ + E +
Sbjct: 513 GRLFDKNGNLESWWKNQSVEAF 534
>SB_31479| Best HMM Match : Peptidase_M13_N (HMM
E-Value=1.60028e-42)
Length = 627
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/86 (30%), Positives = 41/86 (47%)
Frame = +1
Query: 1 VMWRVAGASVSYLTDDLRRRQLAYITALSGKTERESRWKECADTTSASMSIAVGALYIRK 180
VMWRV L + +L + AL G+ RWK+C ++ +G L+I
Sbjct: 501 VMWRVLDKYRDTLPSSISSLKLPFFKAL-GEDINTPRWKDCIKNMLDVATMPLGLLFIDT 559
Query: 181 YFNENSKANALEMVNDIRQQFRKTLP 258
+F++ +K + EM +RQ F LP
Sbjct: 560 HFDDATKKSVEEMTELVRQSFIDRLP 585
Score = 31.1 bits (67), Expect = 0.99
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 267 WMDDMTRQEALEKADAMASHIAYPSEMLDNNRLTEFY 377
WMD T+++A +KA A+ I YP + D +L Y
Sbjct: 589 WMDAATQKQAKDKALAIKVDIGYPPFIRDPEKLAAMY 625
>SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 849
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +2
Query: 503 SPAIVNAFYSSIENSIQFPAGILQGAFFSAKRPAYM 610
+P VNA+YSS +N I FPAGILQ F+ P Y+
Sbjct: 39 NPPTVNAYYSSTDNKIVFPAGILQDPFYEGDHPKYV 74
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 675 RQFDKNGNLVDWWQEMTKEKYLDK 746
R+F+K+GNL+ WW + E + K
Sbjct: 124 RKFNKDGNLLTWWTNNSIEAFKKK 147
>SB_45747| Best HMM Match : Peptidase_M13 (HMM E-Value=3.4e-05)
Length = 168
Score = 45.2 bits (102), Expect = 6e-05
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +2
Query: 605 YMNYGAIGFVIGHEITHGFDDQG 673
Y+ YGAIG VIGHEITHGFD G
Sbjct: 79 YLKYGAIGMVIGHEITHGFDGTG 101
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 672 GRQFDKNGNLVDWWQEMTKEKYLDK 746
GR +DK GNL +WW + ++ K
Sbjct: 101 GRLYDKYGNLREWWSAGSSYNFMRK 125
>SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1236
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +3
Query: 258 KVDWMDDMTRQEALEKADAMASHIAYPSEMLDNNRLTEFYSGLEMS-SEHLMESVLNLTL 434
+V W+D T + EKADA+ + YP + D + + Y L ++ + H ++V+
Sbjct: 477 QVPWIDKHTDEAVHEKADAIVVKVGYPDYLFDEKQFNQRYENLNITDTVHWFQNVVEADK 536
Query: 435 FTTEYLFGKLREPVNKTDWVTHG 503
F + + KL V K +++G
Sbjct: 537 FASWQTYQKLGSVVPKHQSISYG 559
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +2
Query: 581 FFSAKRPAYMNYGAIGFVIGHEITHGFDDQGPAI 682
F S +R ++YGAIG V+GHE+THGFD G ++
Sbjct: 1202 FCSCRRS--ISYGAIGHVLGHELTHGFDTTGESL 1233
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +2
Query: 608 MNYGAIGFVIGHEITHGFDDQG 673
++YGAIG V+GHE+THGFD G
Sbjct: 556 ISYGAIGHVLGHELTHGFDTTG 577
Score = 36.3 bits (80), Expect = 0.026
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +1
Query: 1 VMWRVAGASVSYLTDDLRRRQLAYITALSGKTERESRWKECADTTSASMSIAVGALYIRK 180
+MWR+ V L++ R+ L G + R +C T+ + VGAL+IR+
Sbjct: 1042 MMWRLVKDVVPLLSNKFRKVHFDLKKKLLGAKHDKPRSTKCFGYTNNILGPLVGALFIRE 1101
Query: 181 YFNENSKANALEMVNDIRQQF 243
F+ SK M+ I + F
Sbjct: 1102 AFSPESKHKVETMMKGIIKAF 1122
Score = 35.1 bits (77), Expect = 0.061
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +1
Query: 1 VMWRVAGASVSYLTDDLRRRQLAYITALSGKTERESRWKECADTTSASMSIAVGALYIRK 180
+MWR+ V L++ R+ L G + R +C T+ + VGAL+IR+
Sbjct: 361 MMWRLVKDVVPLLSNKFRKAHFDLTKNLFGAKRDKPRSTKCFGYTNNILGPLVGALFIRE 420
Query: 181 YFNENSK 201
F+ SK
Sbjct: 421 AFSPESK 427
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 258 KVDWMDDMTRQEALEKADAMASHIAYPSEMLDNNRLTEFY 377
+V W+D T + EKADA+ + YP + D + + Y
Sbjct: 1128 QVPWIDKHTNEAVHEKADAVVVKVGYPDYLSDEKQFNQRY 1167
>SB_43754| Best HMM Match : Peptidase_M13 (HMM E-Value=6.9e-07)
Length = 174
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 581 FFSAKRPAYMNYGAIGFVIGHEITHGFDDQG 673
F S +R ++YGAIG V+GHE+THGFD G
Sbjct: 46 FCSCRRS--ISYGAIGHVLGHELTHGFDTTG 74
>SB_43957| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.6e-13)
Length = 560
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 261 VDWMDDMTRQEALEKADAMASHIAYPSEMLDNNRLTEFY 377
+ WMD++T+ A EKA+ + +I YP ++D+ L Y
Sbjct: 380 ITWMDNVTKHVAEEKAEYLLENIGYPDYVMDSKHLASLY 418
Score = 31.9 bits (69), Expect = 0.57
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 654 TVLMTRGRQFDKNGNLVDWWQEMTKEKYLDK 746
T+L +G+ ++K GN + WW + T + + +K
Sbjct: 432 TMLAIQGKDYNKYGNNIKWWTDKTIQNFYNK 462
>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
Length = 1860
Score = 35.9 bits (79), Expect = 0.035
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +2
Query: 608 MNYGAIGFVIGHEITHGFDDQG 673
+NY AIG +GHE+ HGFD+ G
Sbjct: 1709 VNYEAIGSTVGHELLHGFDNAG 1730
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 672 GRQFDKNGNLVDWWQEMTKEKYLDK 746
G+ FD++GN WW T K+ +K
Sbjct: 1730 GKDFDQHGNRASWWTADTLSKFTEK 1754
>SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 35.9 bits (79), Expect = 0.035
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Frame = +2
Query: 503 SPAIVNAFYSSIENSIQFPA---GILQGA--FFSAKRPAY------MNYGAIGFVIGHEI 649
SP +VNA Y N + F +L+ + + + + Y M++G IG ++ HE+
Sbjct: 537 SPLLVNAAYEPTMNKMNFSVFTKNVLKDSNLLYESLQLFYILSNRAMSFGGIGSIMAHEL 596
Query: 650 THGFDDQG 673
HGFD++G
Sbjct: 597 IHGFDNEG 604
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/76 (19%), Positives = 36/76 (47%)
Frame = +3
Query: 267 WMDDMTRQEALEKADAMASHIAYPSEMLDNNRLTEFYSGLEMSSEHLMESVLNLTLFTTE 446
WM ++ A+EKA+ M +I YP +L++ L + + + + +++++
Sbjct: 460 WMSRQSKNRAIEKANYMTQNIGYPDYILNDKLLDKEFERVIVDKSSFFNTMISMNANFKR 519
Query: 447 YLFGKLREPVNKTDWV 494
+ +PV+ W+
Sbjct: 520 KEYLTALKPVDIQLWI 535
Score = 30.7 bits (66), Expect = 1.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 672 GRQFDKNGNLVDWWQEMTKEKYL 740
G+ FDK GN + WW + T + ++
Sbjct: 604 GKDFDKYGNNIKWWSDKTDKSFV 626
>SB_6906| Best HMM Match : Peptidase_M13 (HMM E-Value=7.5e-23)
Length = 223
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 672 GRQFDKNGNLVDWWQEMTKEKYLDK 746
GR FDK+GNL +WW + K
Sbjct: 70 GRMFDKDGNLNNWWSSEASMNFNSK 94
>SB_18790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 387 EMSSEHLMESVLNLTLFTTEYLFGKLREPVNKTDWVT 497
+++ L++ ++N+ LF YLF K R +T W T
Sbjct: 442 DLAIVELLDVMINIPLFMDYYLFTKKRNLTRETSWYT 478
>SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37)
Length = 1041
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 201 GECFRNGQ*YQTTVS*DSTKVDWMDDMTRQEALEKADAMASHIAYPSEMLDNNRLTEF 374
G FRNG+ + KV W+++ + L K + I Y SE + R T+F
Sbjct: 333 GSFFRNGKHREVGWWESGRKVAWLNEDVAEVRLIKLTGLTKEIIYGSERIQVVRYTKF 390
>SB_18789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 387 EMSSEHLMESVLNLTLFTTEYLFGKLREPVNKTDWVT 497
+++ L++ ++N+ LF YLF K R +T W T
Sbjct: 56 DLAIVELLDVMVNIPLFMDYYLFTKKRNLTRETSWYT 92
>SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5)
Length = 722
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 56 DDNWPTSQLCQEKLNARVDGKNA 124
DD W T+Q C E+L D KN+
Sbjct: 294 DDGWSTNQACPEQLFRESDSKNS 316
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 56 DDNWPTSQLCQEKLNARVDGKNA 124
DD W T+Q C E+L D KN+
Sbjct: 429 DDGWSTNQACPEQLFRESDSKNS 451
>SB_46387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 28.3 bits (60), Expect = 7.0
Identities = 7/23 (30%), Positives = 17/23 (73%)
Frame = +3
Query: 669 RGRQFDKNGNLVDWWQEMTKEKY 737
+G++ D G+ V+WW ++T +++
Sbjct: 337 QGKRSDSKGSQVEWWTDITSDEF 359
>SB_22477| Best HMM Match : E-MAP-115 (HMM E-Value=0.7)
Length = 569
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 270 MDDMTRQEALEKADAMASHIAYPSEMLDNNRLTEFYSGLEMSSEHLMES 416
+DD T +A+ + YP++ + +++ E+Y GLE+ + +ES
Sbjct: 360 LDDSTAAVMAAAIHGLAAVLVYPADEVSADQVCEWYCGLEVPALTPVES 408
>SB_25208| Best HMM Match : PAN (HMM E-Value=0.019)
Length = 245
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 574 RSILLCQTSCLHELRCY 624
RSI CQTSC ++RC+
Sbjct: 46 RSIFDCQTSCSKDMRCF 62
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,064,331
Number of Sequences: 59808
Number of extensions: 540513
Number of successful extensions: 1212
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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