Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30281
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.0  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.3  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   9.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.3  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   9.3  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 221 SMISDNSFVRLYQGG 265
           ++ S N FVRLYQ G
Sbjct: 102 TITSPNKFVRLYQDG 116


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
 Frame = +1

Query: 331 PTPVKCLTTTDS----PNSTL 381
           P P+ C TT DS    PN TL
Sbjct: 655 PRPISCHTTPDSFIEAPNKTL 675


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 649 DFMSNDETNSTVIH 608
           D+ S  ETN+TV+H
Sbjct: 221 DWSSKTETNATVLH 234


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +2

Query: 491 GHPRSPAIVNAFYSSIENSIQFPAGILQG 577
           G+P +P +  A Y  +E  +      L+G
Sbjct: 116 GYPFNPCLTEAQYKEMEEKVSSTLSGLEG 144


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 276 DMTRQEALEKADAMASHIAYPSEMLDNNRLTEFYSG 383
           D++  E     DA+       +  L  NR++ FY+G
Sbjct: 437 DLSGNELTSVPDALRDLALLKTLDLGENRISNFYNG 472


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +2

Query: 491 GHPRSPAIVNAFYSSIENSIQFPAGILQG 577
           G+P +P +  A Y  +E  +      L+G
Sbjct: 132 GYPFNPCLTEAQYKEMEEKVSSTLSGLEG 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,998
Number of Sequences: 438
Number of extensions: 4493
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)