Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30281
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36550.1 68417.m05190 U-box domain-containing protein low sim...    29   4.3  
At5g60410.2 68418.m07579 DNA-binding family protein contains Pfa...    28   5.7  
At5g60410.1 68418.m07578 DNA-binding family protein contains Pfa...    28   5.7  
At5g45650.1 68418.m05613 subtilase family protein contains Pfam ...    28   7.6  
At5g18700.1 68418.m02219 protein kinase-related contains protein...    27   10.0 

>At4g36550.1 68417.m05190 U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 577

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +3

Query: 276 DMTRQEALEKADAMASHIAYPSEMLDNNRLTEFYSGLEMSSEHLMESVL 422
           ++  +EAL   + +++H   PS++  +  L+     +E  +EHL E  +
Sbjct: 335 EVVAEEALNILEVLSNHPHGPSKITSSGSLSSLLKIVESQAEHLQEQAM 383


>At5g60410.2 68418.m07579 DNA-binding family protein contains Pfam
           profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
           PF00628 PHD-finger
          Length = 885

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
 Frame = -1

Query: 738 DTSLWSFPATSPQ--GFRFYR 682
           DT LWSFP+ +P+  GF+ +R
Sbjct: 666 DTPLWSFPSETPEAPGFQLFR 686


>At5g60410.1 68418.m07578 DNA-binding family protein contains Pfam
           profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
           PF00628 PHD-finger
          Length = 873

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
 Frame = -1

Query: 738 DTSLWSFPATSPQ--GFRFYR 682
           DT LWSFP+ +P+  GF+ +R
Sbjct: 666 DTPLWSFPSETPEAPGFQLFR 686


>At5g45650.1 68418.m05613 subtilase family protein contains Pfam
           domain, PF00082: Subtilase family; contains Pfam domain,
           PF02225: protease associated (PA) domain
          Length = 791

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 336 PSEMLDNNRLTEF--YSGLEMSSEHLMESVLNLTLFTTEYLFGKLREPVNKTDWVTHGR 506
           PS+M  + R+  +  YSG  MS  H+  ++  L     ++    +R  +  T W+T+ +
Sbjct: 559 PSKMSVDQRVAGYNIYSGTSMSCPHVAGAIALLKAIHPKWSSAAIRSALMTTAWMTNDK 617


>At5g18700.1 68418.m02219 protein kinase-related contains protein
           kinase domain, INTERPRO:IPR000719
          Length = 1366

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 610 HVSRTFGREECSL*DTSRKLYAVLNRRIESVDDSGRPWVTQSVLLTGSLSLPN 452
           H+    G  +CS     RK   +     +SVD S +  V Q V +  SL+ PN
Sbjct: 5   HIYEAIGHGKCSTVYKGRKKKTIEYFACKSVDKSRKNKVLQEVRILHSLNHPN 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,371,643
Number of Sequences: 28952
Number of extensions: 376264
Number of successful extensions: 930
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)