Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30280
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    33   0.015
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   1.7  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   2.2  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    26   3.0  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    26   3.0  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   3.9  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    25   6.8  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   6.8  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   9.0  
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    24   9.0  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    24   9.0  

>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 33.5 bits (73), Expect = 0.015
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 117 YSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLEPKTCHY 248
           + NG +CD T RPR   +  +C  NS +P +++ Y  E  +C Y
Sbjct: 197 FRNGTMCDITKRPRHVILSYECSTNSDTP-EITQY-QEVSSCAY 238


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 290  LADENGL-IKTVREALEKKKERSEAVDDVSDKNVPKYEN 403
            + DE+ L +KT+REAL+ K    + +  + ++N  +Y++
Sbjct: 1029 VTDESQLMLKTLREALQSKTNNIDHLSTILERNRKEYKS 1067


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 25/92 (27%), Positives = 36/92 (39%)
 Frame = +2

Query: 119 FERRRLRQNRPTPADRGQT*MSREFVESSSSLPVLVGT*NLSLYTGVESPLICDILPLAD 298
           FER RL  +      R     +R  VESSSS   + G   +    G     + +     D
Sbjct: 244 FERLRLESSSSPMMRRSSLNSNRRSVESSSSAAFVEGQSFILDSNGAIE--VANSAFALD 301

Query: 299 ENGLIKTVREALEKKKERSEAVDDVSDKNVPK 394
           ++ L     E LE KK+ S+      +  V K
Sbjct: 302 DSDLESAYNEELEMKKDTSKPTASTKEVVVEK 333


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 68  RESSETYRSKNFNIAFLFERRRLRQNRPTP 157
           RES +T    NF +A++FE +R + + P+P
Sbjct: 324 RESGDT-ACLNFALAWMFEFKRSQYSNPSP 352


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 183 LENSSSPAQVSLYLLE-PKTCHYILAWNRL*YATYCPW 293
           +E +     + L++ E PKTC   L   +L Y  +CP+
Sbjct: 5   IETTVGDLVIDLFVKEAPKTCENFLKLCKLKYYNFCPF 42


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 254 GVESPLICDILPLA-DENGLIKTVREALEKKKERSEAVDDVSDKNVPKYEND 406
           G+E+P+I  +LP+  DE  L       LE  +   E  DD +  N     +D
Sbjct: 571 GIENPIISPLLPVKDDEKDLDLRELNPLEPFENMKEQADDGTVTNPLNVSSD 622


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 24  RFDEKAHLDWIKDNKGKAPKPIDQRISISHFYSN 125
           R  EK H+DW+    G      D  I  +HF  N
Sbjct: 234 RSREKGHVDWVIVKLGARGYIDDALIDTNHFKGN 267


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 27  FDEKAHLDWIKDNKGKAPKPID 92
           FDE   +D++ D K  A  P+D
Sbjct: 377 FDESQQIDFLLDTKLSAENPVD 398


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 275  CDILPLADENGLIKTVREALEKKKERSEAVDDVSDKNV 388
            C+I  + D+N ++KT  + +  KK+   ++  V DK++
Sbjct: 1029 CEICEINDKNEIVKTRSQRIHSKKKAFLSL--VPDKSI 1064


>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = +3

Query: 54  IKDNKGKAPKPIDQRISISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYL--- 224
           I+D  G+ P  + +++ I+H   N    D T +     +  + +E +    +++ YL   
Sbjct: 65  IRDQDGETPLFVCEKLEIAHDLINQYNADTTVKNNDGLIAAQVIEANGEFPELAKYLYSF 124

Query: 225 --LEPKTCHYILAWNRL*YA 278
             LEPK  + +    ++ YA
Sbjct: 125 TDLEPKDVNTLPNDTKIEYA 144


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -1

Query: 290 RAIC---RISKAIPRQYIMTGFRFQQVQGDLSWTRR 192
           R +C    +SK I R+YI  G  F  +   +S+ RR
Sbjct: 430 REVCGLFNVSKTICREYIQFGNAFNLMHCGVSYVRR 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,701,589
Number of Sequences: 5004
Number of extensions: 31248
Number of successful extensions: 111
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)