Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30280
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0916 - 25932934-25933090,25933170-25933276,25933356-259334...    46   2e-05
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723...    29   1.7  
10_08_0680 - 19846481-19846767,19847192-19847379,19847467-198476...    29   2.2  
04_03_0643 + 18328807-18331969,18332560-18332627                       27   5.1  
04_03_0108 - 11340504-11340680,11341580-11341665,11341784-113418...    27   5.1  
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405...    27   6.7  
04_04_1137 - 31153104-31153239,31153804-31154660,31155053-311552...    27   8.8  

>06_03_0916 -
           25932934-25933090,25933170-25933276,25933356-25933422,
           25933509-25933624,25933873-25933944,25934055-25934255,
           25934652-25934728,25935131-25935230
          Length = 298

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
 Frame = +3

Query: 15  ILGRFDEKAHLDWIKDNKGKAPKPIDQRISIS-----HFYSNGDVCDKTGRPRQTEVKLK 179
           +LG +D  A   + ++    +    D  I  S     H Y+NG VCD T  PR+TEV+  
Sbjct: 156 VLGEYDADATDAYYENQTSDSADEDDNLIDTSKRYHVHLYTNGTVCDLTDMPRETEVRFV 215

Query: 180 CLENSSSPAQVSLYLLEPKTCHYIL 254
           C    S P  V   + E  +C Y+L
Sbjct: 216 C----SEPTVVISSIKEISSCKYVL 236


>01_05_0660 -
           24071523-24071780,24071873-24072127,24072209-24072380,
           24072458-24072685,24072785-24072918,24073005-24073088,
           24073231-24073521,24073599-24073931,24074016-24074266,
           24074354-24074620,24074707-24074867,24074978-24075294,
           24075386-24075667,24075753-24076054,24076147-24076237,
           24076326-24076379,24076497-24076573,24076700-24076859,
           24077129-24077213,24077421-24077630,24077736-24078097
          Length = 1457

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 164 GLPGSAGFVANVAVRIEMRY*NSLIYRFRSFPFIILDPVQMRFLIKS 24
           G PG     AN+   I +   NS +Y FR+F  +++  + M    ++
Sbjct: 510 GAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRT 556


>10_08_0680 -
           19846481-19846767,19847192-19847379,19847467-19847666,
           19847799-19848060,19848652-19848758
          Length = 347

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 129 DVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLEP 233
           D C+KTG  R+T V+   +     PA  S Y  EP
Sbjct: 40  DECEKTGSLRETSVRHCQVPTDDHPADKSWYAHEP 74


>04_03_0643 + 18328807-18331969,18332560-18332627
          Length = 1076

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -2

Query: 199 LDEFSRHLSLTSVCRGRPVLSQTSPFE*KCDIEIL*SIGFGAFPLLSLIQSKC 41
           L E  ++L +    RGRPV   T+    + ++ +L  +G G     ++ Q  C
Sbjct: 213 LKELKQNLGVRGRKRGRPVACSTTAEARRTELPVLPIVGMGGIGKTTMAQQIC 265


>04_03_0108 -
           11340504-11340680,11341580-11341665,11341784-11341827,
           11342339-11342428,11343762-11343928,11343986-11344010,
           11344636-11344797,11345376-11345422,11345926-11345985,
           11346094-11346465
          Length = 409

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 66  KGKAPKPIDQRISISHFYSNGDVCDKTGRP 155
           KGK+ +P+ Q+I + +   + D+C K   P
Sbjct: 135 KGKSREPVVQKIQLPNISLHSDICKKAHPP 164


>05_07_0079 -
           27539389-27539892,27540059-27540343,27540453-27540550,
           27540951-27541042,27541155-27541259,27541360-27541567,
           27542469-27542472,27542742-27542765,27545025-27546266
          Length = 853

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 296 DENGLIKTVREALEKKKE-RSEAVDDVSDKN 385
           D+ G   +V EA  KKK+ + E V DV +KN
Sbjct: 366 DKEGEDASVEEASNKKKKGKKEVVSDVGEKN 396


>04_04_1137 -
           31153104-31153239,31153804-31154660,31155053-31155202,
           31156188-31156292,31156405-31156473
          Length = 438

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 102 SISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVS 215
           S+ H  S G+V +   +P++ + K K ++  S+P + S
Sbjct: 181 SVEHESSTGEVANMEHKPKEKKQKTKPVKQISTPLRAS 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,673,544
Number of Sequences: 37544
Number of extensions: 200362
Number of successful extensions: 482
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)