Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30280
         (440 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35933| Best HMM Match : CIMR (HMM E-Value=6.3e-14)                  33   0.14 
SB_49770| Best HMM Match : SURF6 (HMM E-Value=0.92)                    29   1.7  
SB_36246| Best HMM Match : DDE (HMM E-Value=9.99967e-42)               29   2.2  
SB_50196| Best HMM Match : efhand (HMM E-Value=0.0048)                 28   3.0  
SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12)                28   3.0  
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_13258| Best HMM Match : efhand (HMM E-Value=0.0048)                 28   3.0  
SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)              27   6.9  
SB_46288| Best HMM Match : Troponin (HMM E-Value=3.7)                  27   9.1  

>SB_35933| Best HMM Match : CIMR (HMM E-Value=6.3e-14)
          Length = 644

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +3

Query: 120 SNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLEPKTCHYILAW 260
           + GD+C  +   RQT +   C + +       +++ E   C Y  AW
Sbjct: 222 TGGDLCHHSNTYRQTIISFTCKDTADDFVGAPVFVAESDQCEYYFAW 268


>SB_49770| Best HMM Match : SURF6 (HMM E-Value=0.92)
          Length = 270

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 185 REFVESSSSLPVLVGT*NLSLYTGVES---PLICDILPLADENGLIKTVREALEKKKERS 355
           RE   S +S P  +G   L +  G ++     +  I+PL+D   ++ +  E +E   E  
Sbjct: 80  RENESSVTSEPGRMGALKLKIKLGGQTFTTKQVAKIVPLSDPEHMVTSEEEEVEPDVETV 139

Query: 356 EAVDDVSDK 382
           +A DD  D+
Sbjct: 140 DATDDTLDR 148


>SB_36246| Best HMM Match : DDE (HMM E-Value=9.99967e-42)
          Length = 454

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +3

Query: 30  DEKAHLDWIKDNKGKAPKPIDQRISISHFYSNGDVCDKTGRPRQTEVKLKCLENS 194
           D K  + W   + G  P   D    IS       VC  T  PR TE+  +CL+NS
Sbjct: 9   DRKKRILWY--DSGNEPLACD----ISSLVQRCVVCKPTIMPRATELSKRCLQNS 57


>SB_50196| Best HMM Match : efhand (HMM E-Value=0.0048)
          Length = 112

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 296 DENGLIKTVREALEKKKERSEAVDDVSDKNVPK 394
           D   + K +++ALE  K + + V+   DKN+P+
Sbjct: 43  DHKEMAKYLKDALEIAKRKVKQVEATQDKNIPR 75


>SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12)
          Length = 917

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 257 VESPLICDILPLADENGLIKTV 322
           VESP+IC +L   DE+GL   +
Sbjct: 895 VESPIICPLLDKVDEHGLFPPI 916


>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +3

Query: 54  IKDNKGKAPKPID---QRISISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYL 224
           +K   G+  KP +   Q++   H     D+    G+P Q +     +  S+ P+QV  + 
Sbjct: 240 LKQQPGQPAKPQELTPQKLPFHHHNKGYDIQGPHGKPEQKQYTTHNVVPSAHPSQVPHHK 299

Query: 225 LEPKT 239
            EP T
Sbjct: 300 SEPHT 304


>SB_13258| Best HMM Match : efhand (HMM E-Value=0.0048)
          Length = 305

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 296 DENGLIKTVREALEKKKERSEAVDDVSDKNVPK 394
           D   + K +++ALE  K + + V+   DKN+P+
Sbjct: 43  DHKEMAKYLKDALEIAKRKVKQVEATQDKNIPR 75


>SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)
          Length = 951

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 54  IKDNKGKAPKPIDQRISI 107
           IK N GK PKP+D++  I
Sbjct: 374 IKKNSGKLPKPLDKKTKI 391


>SB_46288| Best HMM Match : Troponin (HMM E-Value=3.7)
          Length = 152

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +2

Query: 236 NLSLYTGVESPLICDILPLADENGLIKTVREALEKKKERSEAVDDVSDKNVPKYEND 406
           +++ + G ES    +IL   DENGLI TV  A    K ++E  +  + +     END
Sbjct: 28  HIAAHPGHESQQEKEIL---DENGLITTVDAARIIAKSKAEQAEQETVRREKVVEND 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,531,632
Number of Sequences: 59808
Number of extensions: 230207
Number of successful extensions: 659
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)