Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30280
(440 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-2|CAB60843.3| 534|Caenorhabditis elegans Hypothetical ... 67 5e-12
Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical pr... 31 0.49
Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical p... 31 0.49
AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl cholin... 31 0.49
U23514-6|AAC46544.2| 816|Caenorhabditis elegans Hypothetical pr... 30 0.65
Z54342-8|CAA91152.1| 459|Caenorhabditis elegans Hypothetical pr... 29 1.5
AC024755-3|AAL65801.1| 231|Caenorhabditis elegans Hypothetical ... 29 2.0
Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical pr... 28 3.5
AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc ... 28 3.5
U56963-8|AAB38121.1| 155|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z75953-3|CAB00100.1| 611|Caenorhabditis elegans Hypothetical pr... 27 8.0
AF166171-1|AAD49860.1| 611|Caenorhabditis elegans adducin-head-... 27 8.0
>AL132876-2|CAB60843.3| 534|Caenorhabditis elegans Hypothetical
protein Y105E8A.2 protein.
Length = 534
Score = 67.3 bits (157), Expect = 5e-12
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 KTTVILGRFDEKAHLDWIK-DNKGKAPKPIDQRIS-ISHFYSNGDVCDKTGRPRQTEVKL 176
++ ++LG FDE H +W+K D + + +I IS Y+ GD+CD+TG EV++
Sbjct: 381 RSDILLGVFDEVVHKEWVKLDRHARGAIQGNNQIDQISQIYAKGDICDETGA-HNVEVRI 439
Query: 177 KCLENSSSPAQVSLYLLEPKTCHYIL 254
+C S S++L EP+TC Y+L
Sbjct: 440 RCATADHSALSFSMHLTEPRTCQYVL 465
>Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 30.7 bits (66), Expect = 0.49
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 51 WIKDNKGKAPKPIDQRISISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYL 224
W D KG P +I S++ N + ++ EVK C N+ + Q++LYL
Sbjct: 177 WTYDQKGIDYFPYSDKIGTSNYLENEGWYILQTKIKRQEVKYACCPNNYTLLQLTLYL 234
>Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 30.7 bits (66), Expect = 0.49
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 51 WIKDNKGKAPKPIDQRISISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYL 224
W D KG P +I S++ N + ++ EVK C N+ + Q++LYL
Sbjct: 177 WTYDQKGIDYFPYSDKIGTSNYLENEGWYILQTKIKRQEVKYACCPNNYTLLQLTLYL 234
>AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl choline
receptor alpha subunitDES-2 protein.
Length = 548
Score = 30.7 bits (66), Expect = 0.49
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 51 WIKDNKGKAPKPIDQRISISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYL 224
W D KG P +I S++ N + ++ EVK C N+ + Q++LYL
Sbjct: 177 WTYDQKGIDYFPYSDKIGTSNYLENEGWYILQTKIKRQEVKYACCPNNYTLLQLTLYL 234
>U23514-6|AAC46544.2| 816|Caenorhabditis elegans Hypothetical
protein F48E8.4 protein.
Length = 816
Score = 30.3 bits (65), Expect = 0.65
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 90 DQRISISHFYSNGDVCD--KTGRPRQTEVKLKCLENSSSPAQVSLYLLEPKTCHYIL 254
D+ + + Y++G CD + PR T V+ +C S+ ++E K C Y++
Sbjct: 178 DRLLFVEETYTSGTFCDLEEYREPRMTSVRYECDAQLSTNEVYISSVVEVKPCQYLM 234
>Z54342-8|CAA91152.1| 459|Caenorhabditis elegans Hypothetical
protein C08H9.13 protein.
Length = 459
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 150 RPRQTEVKLKCLENSSSPAQVSLYLLEPKTCHYILAWNRL*YATYCPW 293
+P+ T L + SSP+ + YL HY+ N L Y Y PW
Sbjct: 241 QPKGTRYLLSIIV-PSSPSDLEYYLRMDGLLHYVDFLNVLTYGYYAPW 287
>AC024755-3|AAL65801.1| 231|Caenorhabditis elegans Hypothetical
protein Y34B4A.6 protein.
Length = 231
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +3
Query: 117 YSNGDVCDKTGRPRQTEVKLKC-----LENSSSPAQVSLYLLEPKTCHYILAWN 263
++N +VC + QT +C +++ + PAQ Y+ C++ L WN
Sbjct: 141 FANSEVCGSSVFNNQTAAMRQCDNDFNVKSMADPAQACAYVEIAANCYFQLFWN 194
>Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical
protein M04B2.1 protein.
Length = 870
Score = 27.9 bits (59), Expect = 3.5
Identities = 25/91 (27%), Positives = 42/91 (46%)
Frame = +2
Query: 134 LRQNRPTPADRGQT*MSREFVESSSSLPVLVGT*NLSLYTGVESPLICDILPLADENGLI 313
L + P P+ G T ++ E SS+PV GV+ P+ C L D++ +
Sbjct: 161 LDEEEPEPSVNGTTEIATEKEPEDSSMPVEQNG------KGVKRPVECIELDDDDDDEIQ 214
Query: 314 KTVREALEKKKERSEAVDDVSDKNVPKYEND 406
+ A KK + +DDV +VP+ +N+
Sbjct: 215 EISTPAPAKKAK----IDDVKATSVPEEDNN 241
>AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc
finger protein protein.
Length = 870
Score = 27.9 bits (59), Expect = 3.5
Identities = 25/91 (27%), Positives = 42/91 (46%)
Frame = +2
Query: 134 LRQNRPTPADRGQT*MSREFVESSSSLPVLVGT*NLSLYTGVESPLICDILPLADENGLI 313
L + P P+ G T ++ E SS+PV GV+ P+ C L D++ +
Sbjct: 161 LDEEEPEPSVNGTTEIATEKEPEDSSMPVEQNG------KGVKRPVECIELDDDDDDEIQ 214
Query: 314 KTVREALEKKKERSEAVDDVSDKNVPKYEND 406
+ A KK + +DDV +VP+ +N+
Sbjct: 215 EISTPAPAKKAK----IDDVKATSVPEEDNN 241
>U56963-8|AAB38121.1| 155|Caenorhabditis elegans Hypothetical
protein T13A10.1 protein.
Length = 155
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 335 EKKKERSEAVDDVSDKNVPKYEND 406
E KKE+S+ +V + + PK END
Sbjct: 69 EPKKEKSKMKSEVKEPDAPKKEND 92
>Z75953-3|CAB00100.1| 611|Caenorhabditis elegans Hypothetical
protein F57F5.4a protein.
Length = 611
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 278 DILPLADENGLIKTVREALEKKKERSEAVDDVSDKNVPKYE 400
D LP+ DE K R ++E + +++++ VPK+E
Sbjct: 221 DDLPIRDEASDQKRARYSIESTSSTNNQLNEINSFVVPKFE 261
>AF166171-1|AAD49860.1| 611|Caenorhabditis elegans
adducin-head-domain-related protein protein.
Length = 611
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 278 DILPLADENGLIKTVREALEKKKERSEAVDDVSDKNVPKYE 400
D LP+ DE K R ++E + +++++ VPK+E
Sbjct: 221 DDLPIRDEASDQKRARYSIESTSSTNNQLNEINSFVVPKFE 261
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,387,200
Number of Sequences: 27780
Number of extensions: 177113
Number of successful extensions: 561
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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