Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30280
         (440 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35080.1 68418.m04151 expressed protein                             45   2e-05
At3g13062.3 68416.m01630 expressed protein weak similarity to SP...    29   1.1  
At3g13062.2 68416.m01631 expressed protein weak similarity to SP...    29   1.1  
At3g13062.1 68416.m01629 expressed protein weak similarity to SP...    29   1.1  
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    29   1.1  
At5g42350.1 68418.m05157 kelch repeat-containing F-box family pr...    29   1.8  
At5g24830.1 68418.m02934 pentatricopeptide (PPR) repeat-containi...    28   2.4  
At2g26860.1 68415.m03222 F-box family protein contains F-box dom...    27   4.2  
At5g58700.1 68418.m07354 phosphoinositide-specific phospholipase...    27   5.6  
At3g49220.1 68416.m05379 pectinesterase family protein contains ...    27   7.4  
At1g34150.1 68414.m04236 tRNA pseudouridine synthase family prot...    27   7.4  

>At5g35080.1 68418.m04151 expressed protein
          Length = 282

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 28/79 (35%), Positives = 36/79 (45%)
 Frame = +3

Query: 18  LGRFDEKAHLDWIKDNKGKAPKPIDQRISISHFYSNGDVCDKTGRPRQTEVKLKCLENSS 197
           LG FD +A   +       A     QR   SH Y+NG  CD TG PR+ EV+  C E  +
Sbjct: 157 LGTFDPEATAAF-NQTVSDASTDASQRYH-SHVYTNGTTCDLTGSPREVEVRFVCAETRA 214

Query: 198 SPAQVSLYLLEPKTCHYIL 254
               ++    E  TC Y L
Sbjct: 215 MVTSIT----ELSTCKYAL 229


>At3g13062.3 68416.m01630 expressed protein weak similarity to
           SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
           {Homo sapiens}
          Length = 411

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 23/70 (32%), Positives = 38/70 (54%)
 Frame = +2

Query: 185 REFVESSSSLPVLVGT*NLSLYTGVESPLICDILPLADENGLIKTVREALEKKKERSEAV 364
           R F  +SSS PV+  + +LS  +G+ + L+ D     D  GLI    + L ++ E +E  
Sbjct: 55  RFFSHASSSSPVVSVSQSLSSQSGISTTLVSD----EDLKGLI----QKLGERSEDAEIW 106

Query: 365 DDVSDKNVPK 394
           +DV  K+ P+
Sbjct: 107 EDVIKKSNPR 116


>At3g13062.2 68416.m01631 expressed protein weak similarity to
           SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
           {Homo sapiens}
          Length = 440

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 23/70 (32%), Positives = 38/70 (54%)
 Frame = +2

Query: 185 REFVESSSSLPVLVGT*NLSLYTGVESPLICDILPLADENGLIKTVREALEKKKERSEAV 364
           R F  +SSS PV+  + +LS  +G+ + L+ D     D  GLI    + L ++ E +E  
Sbjct: 55  RFFSHASSSSPVVSVSQSLSSQSGISTTLVSD----EDLKGLI----QKLGERSEDAEIW 106

Query: 365 DDVSDKNVPK 394
           +DV  K+ P+
Sbjct: 107 EDVIKKSNPR 116


>At3g13062.1 68416.m01629 expressed protein weak similarity to
           SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
           {Homo sapiens}
          Length = 403

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 23/70 (32%), Positives = 38/70 (54%)
 Frame = +2

Query: 185 REFVESSSSLPVLVGT*NLSLYTGVESPLICDILPLADENGLIKTVREALEKKKERSEAV 364
           R F  +SSS PV+  + +LS  +G+ + L+ D     D  GLI    + L ++ E +E  
Sbjct: 55  RFFSHASSSSPVVSVSQSLSSQSGISTTLVSD----EDLKGLI----QKLGERSEDAEIW 106

Query: 365 DDVSDKNVPK 394
           +DV  K+ P+
Sbjct: 107 EDVIKKSNPR 116


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 22/60 (36%), Positives = 33/60 (55%)
 Frame = +2

Query: 194 VESSSSLPVLVGT*NLSLYTGVESPLICDILPLADENGLIKTVREALEKKKERSEAVDDV 373
           VESS++  V      L       S L  +I+PLA+     KT++E  E+  ++SEA+DDV
Sbjct: 730 VESSNADSVFQQLDKLRAVFEEYSKLTTEIIPLAE-----KTLQEHTEELGQKSEALDDV 784


>At5g42350.1 68418.m05157 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 563

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 254 GVESPLICDILPLADENGLIKTVREALEKKKERSEAVDD 370
           GVE  +  D+  L     L+K+V + L+KK  ++E V+D
Sbjct: 9   GVEESIRQDLEVLTVSRRLVKSVSQKLKKKIHKTEVVED 47


>At5g24830.1 68418.m02934 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 593

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 21  GRFDEKAHLDWIKDNKGKAPKPIDQRISISHFYSNGDV 134
           G+FDE   L     N G AP  I  ++ I     +GDV
Sbjct: 349 GKFDEACDLHGTMQNGGVAPDQISYKVIIQGLCIHGDV 386


>At2g26860.1 68415.m03222 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 405

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
 Frame = +3

Query: 27  FDEK-AHLDWIKDNKGKAPKPIDQRISISHFYSNGDVCDKTGRPRQTE-----VKLKCLE 188
           FDE+  H+ WI +++   PK +   + +  F         T RP + +     +K  C  
Sbjct: 338 FDEEFEHVSWIYNDESSVPKCLLDSLEVFEF------AGYTRRPEERDFVSFILKHACHL 391

Query: 189 NSSSPAQVSLYLLE 230
            SSS +++S Y+LE
Sbjct: 392 KSSSISRLSCYVLE 405


>At5g58700.1 68418.m07354 phosphoinositide-specific phospholipase C
           family protein contains Pfam profile: PF00388
           phosphatidylinositol-specific phospholipase C
          Length = 597

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 129 DVCDKTGRPRQTEVKL-KCLENSSSPA 206
           DVC K GR    EVKL KCLE+  + A
Sbjct: 169 DVCVKHGRTLTKEVKLGKCLESIKANA 195


>At3g49220.1 68416.m05379 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 598

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 263 SPLICDILPLADENGLIKTVREALEKKKERS 355
           S +  DI+   D NG  KT+ EA++K  + S
Sbjct: 279 SQIQADIIVSKDGNGTCKTISEAIKKAPQNS 309


>At1g34150.1 68414.m04236 tRNA pseudouridine synthase family protein
           similar to pseudouridine synthase 3 [Mus musculus]
           GI:9652099; contains Pfam profile PF01416: tRNA
           pseudouridine synthase
          Length = 446

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 284 LPLADENGLIKTVREALEKKKERSEAVDDVSDKNVPKYE 400
           LPL++     ++    +EKKK+R+E V  +S    P YE
Sbjct: 390 LPLSNNVSTEESSCNGVEKKKKRAEHVPLLSRPTEPSYE 428


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,849,839
Number of Sequences: 28952
Number of extensions: 168620
Number of successful extensions: 431
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)