Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30279
         (508 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   3.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.6  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   6.3  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   8.4  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   8.4  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
          protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -1

Query: 64 ARVWINVTIFCFN 26
          A+ W+N+ +FC +
Sbjct: 3  AKFWVNLALFCLH 15


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 422 SSSRRPAAWESSW 384
           S+S R +AW+S W
Sbjct: 354 SASNRHSAWQSHW 366


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 164 NYTIEKETQDLPANID 211
           +Y+ E E  DLP NID
Sbjct: 76  DYSSEYEKCDLPFNID 91


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 385 QEDSHAAGRREDDQRKQTVDQE 450
           +E  H    R+DD    TVD +
Sbjct: 26  EEVEHRLSDRDDDDENITVDDD 47


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 314 TSGHQGYVSSNTPLSSKI 367
           TS   GY +  +P+S++I
Sbjct: 70  TSSSMGYTTIGSPISNRI 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,404
Number of Sequences: 336
Number of extensions: 2434
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)