Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30279
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.70 
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   1.2  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    26   3.7  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   6.5  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   6.5  

>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
 Frame = +2

Query: 83  AVRDPVTGQLILHYSQIDPSHFEDKSGNYTIEKETQDLPANIDIQTVNTHKFSTFG-KAK 259
           +VRDP  G L +H +Q      + K+G    +   Q  P   +  +  T   S  G +  
Sbjct: 322 SVRDPDDGTLPIHSTQTVEEPIDTKAGEKLTDSSKQPSPPVAEHFSNETFSASPKGAETD 381

Query: 260 VHKEATNPKPSQSTRRANTSGHQGYVSSNTPLSSKIPVSQ 379
           V  E +N     S     ++     V SN   S K P SQ
Sbjct: 382 VKSEGSNNHEQGSFNEPKSN-----VDSNDSASPKRPSSQ 416


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +2

Query: 134 DPSHFEDKSGNYTIEKETQDLPANI--DIQTVNTHKFSTFGKAK-VHKEATNPK 286
           + SHF + SGN   E+  Q+       D+    T   + FG++   H  A N K
Sbjct: 806 ESSHFSESSGNNEFEETEQEYTHGYGNDVLVQRTDVVNNFGESSHAHDNAVNEK 859



 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 269  EATNPKPSQSTRRANTSGHQGYVSSNTPLSSKIPVS 376
            E T     + T   +  GHQ   +S T ++  IPVS
Sbjct: 957  EGTEDNIVRQTTTVDEDGHQEQTTSTTKVAHPIPVS 992


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = -3

Query: 443 STVCFRWSSSRRPAAWESSWRVGKRGS*RIKECWKTRSPGALMCSLVVYSVKVLGSSPLC 264
           ++ C +WSS    +  E  WR     +  IKE   +R P +    L   S    GSS   
Sbjct: 122 TSTCMKWSSKTTKSEIEVEWRDSYLDANCIKEIIDSRRP-SFASLLTKKSSSHQGSSHSS 180

Query: 263 GLSLYRT 243
             SL+ T
Sbjct: 181 QPSLFTT 187


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +2

Query: 149 EDKSGNYTIEKETQDLPANIDIQTVNTHKFSTFGKAKVHKEATNPKPSQSTRRANTSGHQ 328
           E++    T  ++  D     D++  + H    F  AK + + +   P+QS + ++    +
Sbjct: 44  EEQQREQTENEKLFDPITQRDVEINDVH----FDYAKTYDDPSFTVPNQSIQGSSLPSEK 99

Query: 329 GYVSSNTP 352
            Y+SSN P
Sbjct: 100 PYLSSNQP 107


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +2

Query: 194 LPANIDIQTVNTHKFSTFGKAKVHKEATNPKPSQSTRRANT---SGHQGYVSSNTPLSSK 364
           LP+ +  +T      +TF  AK   E +N  P+ + ++ +T   S     V SN+ LS  
Sbjct: 502 LPSTLQEETATGTTSTTFANAKRRPEDSNISPT-NPKKLHTLPRSPQYSTVDSNSVLSPA 560

Query: 365 IP 370
           +P
Sbjct: 561 MP 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,424
Number of Sequences: 5004
Number of extensions: 39831
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)