Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30279
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0512 - 4259162-4259849,4260209-4260432,4260854-4261071,426... 31 0.70
03_05_1082 - 30239385-30239561,30239937-30240009,30240382-302404... 29 1.6
02_05_0188 + 26587267-26587446,26587733-26587979,26588358-26588665 29 1.6
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 29 1.6
12_01_0438 + 3455686-3455692,3456149-3456240,3457422-3457505,345... 28 5.0
02_01_0662 - 4936695-4936803,4937353-4937684 28 5.0
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123... 28 5.0
06_01_0820 + 6202348-6203313 27 8.7
05_07_0125 + 27861368-27862282 27 8.7
05_03_0184 + 9339939-9340896,9341003-9341083,9341166-9341383,934... 27 8.7
>05_01_0512 -
4259162-4259849,4260209-4260432,4260854-4261071,
4261154-4261234,4261342-4262299
Length = 722
Score = 30.7 bits (66), Expect = 0.70
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 200 ANIDIQTVNTHKFSTFGKAKVHKEATNPKPSQSTRRANTSGHQGYVSSNTPLSSKI 367
A +I T ++ S K+ H +P PSQ+ + H+G S TP S+KI
Sbjct: 56 AESEISTESSLSISEADKSPSHSSMASPSPSQALESTGSPVHRG--SQLTPPSTKI 109
>03_05_1082 -
30239385-30239561,30239937-30240009,30240382-30240432,
30240521-30240978,30241099-30241435,30241836-30241935,
30243880-30244003
Length = 439
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 140 SHFEDKSGNYTIEKETQDLPANIDIQTVNTHKFSTFG-KAKVHKE 271
S ED+ ++TI+KE P N + T N KF G K + KE
Sbjct: 198 SSSEDRKDDHTIDKEDLKKPLNSLVDTANRTKFFRSGPKGQAAKE 242
>02_05_0188 + 26587267-26587446,26587733-26587979,26588358-26588665
Length = 244
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 388 EDSHAAGRREDDQRKQTVDQERGGSYAQRGAGSGR 492
ED A+ RRE R++ +ERG A R G+GR
Sbjct: 23 EDHIASRRRESPHRRRERRRERGEGIAGRRGGAGR 57
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 176 EKETQDLPANIDIQTVNTHKFSTFGKAKVHKEATNPKPSQSTRRANTSGHQGYVSS 343
E+E Q P NI + T K S FG AK+ +P Q+ + G +GY++S
Sbjct: 538 EREFQREPQNILMDAAGTTKISDFGLAKL------LQPDQTRTFTSVRGTRGYLAS 587
>12_01_0438 +
3455686-3455692,3456149-3456240,3457422-3457505,
3457598-3457636,3457952-3458041,3458567-3458611,
3458702-3458789,3458902-3458966,3459063-3459137,
3460231-3460303,3460708-3460799,3460896-3460967,
3461165-3461221,3461316-3461364,3461522-3461610
Length = 338
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 385 QEDSHAAGRREDDQRKQTVDQERGGSYAQRGAGSG 489
QE HA +DD +++T DQ +Y ++ +G G
Sbjct: 54 QEVQHAYEVLKDDDKRETYDQLGAEAYERQASGGG 88
>02_01_0662 - 4936695-4936803,4937353-4937684
Length = 146
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 364 DPRFPTRQEDSHAAGRREDDQR 429
+PRFP DS AA R DD++
Sbjct: 116 EPRFPEDDADSEAARRARDDEK 137
>01_06_0847 + 32411521-32411619,32411737-32411851,32412292-32412375,
32412430-32413478,32414690-32416371,32416477-32416586,
32417634-32418430,32418839-32418951,32419147-32419194,
32419425-32419652,32419732-32419829,32419967-32420019
Length = 1491
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +2
Query: 197 PANIDIQTVNTHKFSTFGKAKVHKEATNPKPSQSTRRA--NTSGHQGYV 337
P ++ T N+H ST HKEA+N S + + SG Q V
Sbjct: 879 PTDVPSNTSNSHPNSTLDLQHSHKEASNENSSNQIHSSSISDSGQQNIV 927
>06_01_0820 + 6202348-6203313
Length = 321
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 430 KQTVDQERGGSYAQRGAGSGRTLAPA 507
K VD+ GGSY G G R L PA
Sbjct: 282 KVLVDEANGGSYNAIGGGGKRFLLPA 307
>05_07_0125 + 27861368-27862282
Length = 304
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 397 HAAGRREDDQRKQTVDQERGGSYAQRGAGSG 489
H G R+ D ++ D RGG RG G G
Sbjct: 203 HRRGNRDRDDFRRERDGYRGGGDGYRGGGGG 233
>05_03_0184 +
9339939-9340896,9341003-9341083,9341166-9341383,
9341796-9342019,9342409-9343096
Length = 722
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 200 ANIDIQTVNTHKFSTFGKAKVHKEATNPKPSQSTRRANTSGHQGYVSSNTPLSSKI 367
A +I ++ S K+ H +P PS++ + H+G S TP S+KI
Sbjct: 56 AESEISPESSLSISEADKSPSHSSMASPSPSRAVESTGSPVHRG--SQLTPPSTKI 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,796,835
Number of Sequences: 37544
Number of extensions: 292547
Number of successful extensions: 981
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -