Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30279
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58968| Best HMM Match : TP2 (HMM E-Value=2)                         31   0.72 
SB_36862| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.95 
SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)                 29   2.2  
SB_59337| Best HMM Match : Chorion_3 (HMM E-Value=2.5)                 28   3.8  
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)                       28   5.1  
SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23)              27   6.7  
SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_33627| Best HMM Match : SMC_hinge (HMM E-Value=0.75)                27   6.7  
SB_26419| Best HMM Match : zf-nanos (HMM E-Value=6.5)                  27   6.7  
SB_18151| Best HMM Match : zf-nanos (HMM E-Value=6.5)                  27   6.7  
SB_7636| Best HMM Match : zf-CCHC (HMM E-Value=6.6)                    27   6.7  
SB_23422| Best HMM Match : Propeptide_C1 (HMM E-Value=7.2)             27   8.9  
SB_56777| Best HMM Match : SmpA_OmlA (HMM E-Value=1.8)                 27   8.9  
SB_28166| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1)             27   8.9  
SB_19921| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_58968| Best HMM Match : TP2 (HMM E-Value=2)
          Length = 190

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +2

Query: 185 TQDLPANIDIQTVNTHKFSTFGKAKVHKEATNPKPSQSTRRANTSGHQGYVSSNTPLSSK 364
           TQD  +++ ++ + +++ S    +  H+    P P    R+ N  GH+ +V S   L SK
Sbjct: 26  TQDPRSHVAVRELGSNQLSGAIISDGHEYKIEPVPHHIRRKMNLEGHRHHVISRRSLRSK 85


>SB_36862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 624

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 218 TVNTHKFSTFGKAKVHKEATNPKPSQSTRRANTSGHQGYVSSNTP 352
           ++    F   G   +H  A   +P QS R+ + SG +G ++  TP
Sbjct: 58  SIEQFSFRADGANFLHNAAPEKRPKQSERKRDQSGSKGKLAGGTP 102


>SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)
          Length = 423

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 125 SQIDPSHFEDKSGNYTIEKETQDLPANIDIQTVNTHKFSTFGKAKVHKE 271
           S +D + FE   G   I++ T+    N  ++ +N+HK     +AK HKE
Sbjct: 87  SLLDGTVFEIVKGLEDIQQLTERNLLNKRMKVINSHKVQRMEQAKKHKE 135


>SB_59337| Best HMM Match : Chorion_3 (HMM E-Value=2.5)
          Length = 480

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 245 FGKAKVHKEATNPKPSQSTRRANTSGHQGYVSSNTP 352
           F  AKVH E   P PS  T  A++    G  S+  P
Sbjct: 419 FAPAKVHAEGAAPAPSPRTHAAHSMTAAGTASAPRP 454


>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1916

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 245 FGKAKVHKEATNPKPSQSTRRANTSGHQGYVSSNTP 352
           F  AKVH E   P PS  T  A++    G  S+  P
Sbjct: 637 FAPAKVHAEGAAPAPSPRTHAAHSMTAAGAASAPGP 672


>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
          Length = 2996

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 212  CQCSPVGLASPSLSCSCRFCL 150
            CQC P G +S  +  SC+ CL
Sbjct: 1545 CQCCPNGYSSTHMKTSCKPCL 1565


>SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23)
          Length = 977

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 212 IQTVNTHKFSTFGK-AKVHKEA-TNPKPSQSTRRANTSGHQGY 334
           +Q  N  K ++F K +K   EA T PKPSQST + + +   GY
Sbjct: 53  VQEGNPAKSASFRKLSKTAVEADTVPKPSQSTAKVSDAKVTGY 95


>SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 212 IQTVNTHKFSTFGK-AKVHKEA-TNPKPSQSTRRANTSGHQGY 334
           +Q  N  K ++F K +K   EA T PKPSQST + + +   GY
Sbjct: 53  VQEGNPAKSASFRKLSKTAVEADTVPKPSQSTAKVSDAKVTGY 95


>SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/81 (22%), Positives = 36/81 (44%)
 Frame = -3

Query: 350 ECWKTRSPGALMCSLVVYSVKVLGSSPLCGLSLYRT*KIYACLLFGCQCSPVGLASPSLS 171
           + W  R+  A   S +   +  L +S + G + +R  ++   +L  C+   +     SL+
Sbjct: 95  QVWLIRAQAAQTVSSLAAKLGKLSASSVVGTTRHRGSRVVNSVLKECRKENLEYKIASLN 154

Query: 170 CSCRFCLRNVMDRFESNVELI 108
           C  +      +DRF+   EL+
Sbjct: 155 CFGKIVEEYGLDRFQDISELL 175


>SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1924

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 212 IQTVNTHKFSTFGK-AKVHKEA-TNPKPSQSTRRANTSGHQGY 334
           +Q  N  K ++F K +K   EA T PKPSQST + + +   GY
Sbjct: 53  VQEGNPAKSASFRKLSKTPVEADTVPKPSQSTAKVSDAKVTGY 95


>SB_33627| Best HMM Match : SMC_hinge (HMM E-Value=0.75)
          Length = 452

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 212 IQTVNTHKFSTFGK-AKVHKEA-TNPKPSQSTRRANTSGHQGY 334
           +Q  N  K ++F K +K   EA T PKPSQST + + +   GY
Sbjct: 270 VQEGNPAKSASFRKLSKTAVEADTVPKPSQSTAKVSDAKVTGY 312


>SB_26419| Best HMM Match : zf-nanos (HMM E-Value=6.5)
          Length = 198

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 212 IQTVNTHKFSTFGK-AKVHKEA-TNPKPSQSTRRANTSGHQGY 334
           +Q  N  K ++F K +K   EA T PKPSQST + + +   GY
Sbjct: 53  VQEGNPAKSASFRKLSKTAVEADTVPKPSQSTAKVSDAKVTGY 95


>SB_18151| Best HMM Match : zf-nanos (HMM E-Value=6.5)
          Length = 271

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 212 IQTVNTHKFSTFGK-AKVHKEA-TNPKPSQSTRRANTSGHQGY 334
           +Q  N  K ++F K +K   EA T PKPSQST + + +   GY
Sbjct: 53  VQEGNPAKSASFRKLSKTAVEADTVPKPSQSTAKVSDAKVTGY 95


>SB_7636| Best HMM Match : zf-CCHC (HMM E-Value=6.6)
          Length = 349

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 212 IQTVNTHKFSTFGK-AKVHKEA-TNPKPSQSTRRANTSGHQGY 334
           +Q  N  K ++F K +K   EA T PKPSQST + + +   GY
Sbjct: 53  VQEGNPAKSASFRKLSKTPVEADTVPKPSQSTAKVSDAKVTGY 95


>SB_23422| Best HMM Match : Propeptide_C1 (HMM E-Value=7.2)
          Length = 628

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 239 STFGKAKVHKEATNPKPSQSTRRANTSGHQGYV 337
           ST G++K       PKP QST ++ +SG Q ++
Sbjct: 243 STQGQSKWRAILVEPKPVQSTTQSPSSGTQQFM 275


>SB_56777| Best HMM Match : SmpA_OmlA (HMM E-Value=1.8)
          Length = 227

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 266 KEATNPKPS-QSTRRANTSGHQGYVSSNTPLSSKIPVSQR 382
           K+ TN  PS +  RR+N+S    +V  +TP+S  +  ++R
Sbjct: 5   KDITNRSPSTRCPRRSNSSDDDIFVDFSTPVSRSLRSTRR 44


>SB_28166| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1)
          Length = 279

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
 Frame = +2

Query: 164 NYTIEKETQDLPANIDIQTVNTHKFSTFGKAKVHKEATNPKPSQSTRRANTSGHQGYVSS 343
           NY  EK    LPAN   +T+  +K S+     + K  T+   ++++R+ N S      S 
Sbjct: 12  NYDFEKAQHKLPAN---RTLRKYKTSSLLTRTMRKHNTSSLLTRTSRKYNKSSLLTRTSR 68

Query: 344 NTPLSSKIP-VSQRAXXXXXXXXXXXXXNESKLLTK 448
               SS +   S++              N S LLT+
Sbjct: 69  KYNTSSLLTRTSRKYNTSSLLTRTFRKYNTSSLLTR 104


>SB_19921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/86 (23%), Positives = 36/86 (41%)
 Frame = +2

Query: 113 ILHYSQIDPSHFEDKSGNYTIEKETQDLPANIDIQTVNTHKFSTFGKAKVHKEATNPKPS 292
           ILHY+ +     E +S     E+E + L   I  Q  N  K ++   +K+  + T+ K  
Sbjct: 53  ILHYTPVTTVQTETRSQKLKREREYRKLKTEIASQ--NASKIASQNASKIASQRTHRKTP 110

Query: 293 QSTRRANTSGHQGYVSSNTPLSSKIP 370
           +  +     GHQ     +  +  + P
Sbjct: 111 RE-KLCYAIGHQLCAQGHVSIHPQAP 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,703,998
Number of Sequences: 59808
Number of extensions: 331118
Number of successful extensions: 1112
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)