Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30279
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical ...    28   3.4  
AC025726-8|AAT81183.1|  537|Caenorhabditis elegans Hypothetical ...    28   3.4  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    27   5.9  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    27   5.9  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    27   5.9  
Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z49132-5|CAA88984.1|  396|Caenorhabditis elegans Hypothetical pr...    27   7.8  
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu...    27   7.8  

>AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical
           protein Y71G12B.23a protein.
          Length = 594

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 197 PANIDIQTVNTHKFSTFGKAKVHKEATNPKPSQSTRRANTSGHQGYVSSNTPLSSKIPVS 376
           P  I+   V  H F +F    + +++T+P+ S S      SG  G +  +TP    I   
Sbjct: 303 PRVIEDDDVVDHHFGSFDSNVLVEKSTSPQFSFSAALCKMSGSCGIIDPDTPPPKAISYK 362

Query: 377 QR 382
            R
Sbjct: 363 NR 364


>AC025726-8|AAT81183.1|  537|Caenorhabditis elegans Hypothetical
           protein Y71G12B.23b protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 197 PANIDIQTVNTHKFSTFGKAKVHKEATNPKPSQSTRRANTSGHQGYVSSNTPLSSKIPVS 376
           P  I+   V  H F +F    + +++T+P+ S S      SG  G +  +TP    I   
Sbjct: 303 PRVIEDDDVVDHHFGSFDSNVLVEKSTSPQFSFSAALCKMSGSCGIIDPDTPPPKAISYK 362

Query: 377 QR 382
            R
Sbjct: 363 NR 364


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 257 KVHKEATNPKPSQSTRRANTSGHQGYVSSNTPLSSKIPVSQR 382
           KV    +   PS+ TR   T  H G +S+ T L+S +  S R
Sbjct: 725 KVRSMLSGRGPSKETRITTTIRHVGQLSNKTILTSMLTESNR 766


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 257 KVHKEATNPKPSQSTRRANTSGHQGYVSSNTPLSSKIPVSQR 382
           KV    +   PS+ TR   T  H G +S+ T L+S +  S R
Sbjct: 703 KVRSMLSGRGPSKETRITTTIRHVGQLSNKTILTSMLTESNR 744


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 257 KVHKEATNPKPSQSTRRANTSGHQGYVSSNTPLSSKIPVSQR 382
           KV    +   PS+ TR   T  H G +S+ T L+S +  S R
Sbjct: 725 KVRSMLSGRGPSKETRITTTIRHVGQLSNKTILTSMLTESNR 766


>Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical
           protein C33G3.6 protein.
          Length = 624

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = +2

Query: 119 HYSQIDPSH--FEDKSGNYTIEKETQDLPANIDIQTVNTHKFSTFGKAKVHKEATNPKPS 292
           H+ Q +P +   E+ S  Y   ++     + I+I T + +    +        + NP P 
Sbjct: 429 HHQQYNPYNQVLENSSSEYNPRQQESRNASYINISTFDGYNHHQYNGHHERANSYNPYPE 488

Query: 293 QSTRRANTSGHQG 331
            S   ++ S H G
Sbjct: 489 NSRNFSHQSQHSG 501


>Z49132-5|CAA88984.1|  396|Caenorhabditis elegans Hypothetical
           protein ZK666.5 protein.
          Length = 396

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -1

Query: 139 WIDLRVM*N*LSSYRVPDCSARVNVARVWINVTIFCFN--STSYWIN 5
           WI  R + + + SYR   C   V +  VW    + C N    SY +N
Sbjct: 232 WIQYRALHDDVDSYRYGICILPVGLTAVWRAAQLSCRNRWRNSYLLN 278


>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
           protein 1 protein.
          Length = 1010

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 164 NYTIE--KETQDLPANIDIQTVNTHKFSTF 247
           N+T +   ET  +  N+D + VNT K ST+
Sbjct: 645 NFTFQGHNETSQIMNNVDSEAVNTSKISTY 674


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,381,969
Number of Sequences: 27780
Number of extensions: 233094
Number of successful extensions: 794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)