Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30279
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.4  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   5.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.6  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   9.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -2

Query: 330 PWCPDVFARRVLCEGFGFVASLWTFALPNVENLCVFTVWMS 208
           P+  D++   +  EG  F +  + F + N + + + T W S
Sbjct: 353 PFIKDIYETVIKLEGASFRSKPYRFGIQNGDYVVLETEWSS 393


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -2

Query: 330 PWCPDVFARRVLCEGFGFVASLWTFALPNVENLCVFTVWMS 208
           P+  D++   +  EG  F +  + F + N + + + T W S
Sbjct: 59  PFIKDIYETVIKLEGASFRSKPYRFGIQNGDYVVLETEWSS 99


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -3

Query: 197 VGLASPSLSCSCRFCLRNVMDRFE 126
           +G+ +  + CSC  C+    ++FE
Sbjct: 76  LGICAEGMQCSCNKCIGCSAEKFE 99


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 200 PVGLASPSLSCSCRFCLRNVMDRFESNVELI 108
           P  LAS     +   CLR+ + + ESN+++I
Sbjct: 159 PAYLASKCALTTLTDCLRSELAQCESNIKVI 189


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 79  ARVNVARVWINVTIFCFNSTSYW 11
           AR+ VA VWI   + CF     W
Sbjct: 182 ARLLVATVWILSFVICFPPLVGW 204


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 228 VFTVWMSMFAGRSCVSFSIV 169
           +FT+W S+FA  + V   IV
Sbjct: 311 LFTIWGSLFAKANAVYNPIV 330


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 91  GPCNWTINSTLLSNRSITFRRQKRQL 168
           G C + I+ + ++N +  FRR  R++
Sbjct: 187 GSCAFGIDMSSMTNENSEFRRMGREV 212


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 306 ERTHQGTRATCLPTLLYPLRSP 371
           ERTH+ T A    TL   +RSP
Sbjct: 878 ERTHRPTFANLTQTLDKLIRSP 899


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -3

Query: 326 GALMCSLVVYSVKVLGSSPLCGLSLY 249
           G L+C LV +++ +  +  +CG+  +
Sbjct: 701 GILLCYLVTFALVLRPTDIVCGIQRF 726



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 113 ILHYSQIDPSHFE 151
           I+H+ QI+P  +E
Sbjct: 542 IIHFKQIEPGKYE 554


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 228 VFTVWMSMFAGRSCV 184
           +FT+W S+FA  + V
Sbjct: 61  LFTIWGSLFAKANAV 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,049
Number of Sequences: 438
Number of extensions: 2736
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)