Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30279
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ...    30   0.78 
At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal hydrolase-r...    29   1.4  
At1g08320.1 68414.m00920 bZIP family transcription factor contai...    29   2.4  
At4g36180.1 68417.m05148 leucine-rich repeat family protein cont...    28   4.2  
At2g43630.1 68415.m05423 expressed protein                             28   4.2  
At1g67330.1 68414.m07664 expressed protein contains Pfam profile...    27   7.3  
At1g07860.1 68414.m00853 expressed protein                             27   7.3  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    27   7.3  

>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
           contains Pfam PF00096: Zinc finger, C2H2 type
          Length = 387

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
 Frame = +2

Query: 107 QLILHYSQIDPSHFEDKSGNY-TIEKETQDLPANIDIQTVNT--HKFSTFGKAKVHKEAT 277
           +L LH  +  P H ++++ +  T+ K   +    ID  +      K ++ GK + HK+ +
Sbjct: 246 KLKLHLKREHPGHLQEENADTPTLNKHNGNDRNEIDDGSDQDVYRKHASNGKGQTHKQQS 305

Query: 278 NPKPSQSTRRANTSGHQGYVSSNTPLSSKI 367
             KP+  T  A   G +G  S+++P  ++I
Sbjct: 306 RAKPNMRTPPAKV-GKKG--STSSPAKARI 332


>At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF04780:
           Protein of unknown function (DUF629), PF04781: Protein
           of unknown function (DUF627)
          Length = 1106

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 260 VHKEATNPKPS--QSTRRANTSGHQGYVSSNTPLS 358
           + +E  NPKPS  QS ++ NTS  +   S ++PLS
Sbjct: 718 LEEEKKNPKPSPIQSKKKKNTSKKRNSTSMSSPLS 752


>At1g08320.1 68414.m00920 bZIP family transcription factor contains
           Pfam profile: PF00170 bZIP transcription factor
          Length = 481

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 239 STFGKAKVHKEATNPKPSQSTRRANTSGHQ 328
           ST G     +    PKPS+  R+A TSG Q
Sbjct: 145 STSGLPSTSRTLAPPKPSEDKRKATTSGKQ 174


>At4g36180.1 68417.m05148 leucine-rich repeat family protein contains
            protein kinase domain, Pfam:PF00069; contains
            leucine-rich repeats, Pfam:PF00560
          Length = 1136

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 287  PSQSTRRANTSGHQGYVSSNTPLSSKI 367
            PS+S   ANT G  GYVS    LS +I
Sbjct: 995  PSRSAVTANTIGTLGYVSPEATLSGEI 1021


>At2g43630.1 68415.m05423 expressed protein
          Length = 274

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 412 REDDQRKQTVDQERGGSYAQRGAGSG 489
           RE  Q+K   D + GG+   RG GSG
Sbjct: 111 REQIQKKDFYDTDSGGNMPPRGGGSG 136


>At1g67330.1 68414.m07664 expressed protein contains Pfam profile
           PF04669: Protein of unknown function (DUF579)
          Length = 291

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -2

Query: 318 DVFARRVLCEGF--GFVASLWTFALPNVENL 232
           + FA   LCE +    V  LW F +PN  N+
Sbjct: 252 NAFANEFLCEKYKVNSVGRLWHFEIPNAANM 282


>At1g07860.1 68414.m00853 expressed protein
          Length = 135

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 276 VASLWTFALPNVENLCVFTVWM 211
           V+  W  A+P +  LC FT+W+
Sbjct: 30  VSEYWIHAIPVIVFLCFFTLWI 51


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 221 LFGCQCSPVGLASPSLSCSCRFCLRNVMDRFESNV 117
           +FG   SPV L   S    C   +RN+  + +S V
Sbjct: 408 IFGMTASPVNLKGVSSQVDCAIKIRNLETKLDSTV 442


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,865,178
Number of Sequences: 28952
Number of extensions: 221482
Number of successful extensions: 693
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)